RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 NOTUMQ6P988 496 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 KRT25Q7Z3Z0 450 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 ETNPPLQ8TBG4 499 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 FAM20AQ96MK3 541 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 NAP1L4Q99733 375 aaKnown RBP13.69□□□□□ -0.22
SNHG1-216ENST00000541416 COLEC11Q9BWP8 271 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 AGXT2Q9BYV1 514 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 TRIM6Q9C030 488 aaPredicted RBP13.69□□□□□ -0.22
SNHG1-216ENST00000541416 ZDHHC7Q9NXF8 308 aa13.69□□□□□ -0.22
SNHG1-216ENST00000541416 ZFP37Q9Y6Q3 630 aaPredicted RBP13.69□□□□□ -0.22
SNHG1-216ENST00000541416 NARSO43776 548 aaKnown RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 GCFC2P16383 781 aaKnown RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 PDIA3P30101 505 aaKnown RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 CCT2P78371 535 aaKnown RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 LAMTOR4Q0VGL1 99 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 PPP2R5CQ13362 524 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 TFDP1Q14186 410 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 MXD4Q14582 209 aaPredicted RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 PHLDB3Q6NSJ2 640 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 GPR65Q8IYL9 337 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 SLC44A3Q8N4M1 653 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 RNF149Q8NC42 400 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 KCNB2Q92953 911 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 SHDQ96IW2 340 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 MBOAT7Q96N66 472 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 HINFPQ9BQA5 517 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 DHX33Q9H6R0 707 aaKnown RBP13.68□□□□□ -0.22
SNHG1-216ENST00000541416 TBC1D17Q9HA65 648 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 RXFP1Q9HBX9 757 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 CA14Q9ULX7 337 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 SIT1Q9Y3P8 196 aa13.68□□□□□ -0.22
SNHG1-216ENST00000541416 CCDC194A0A1B0GVG4 234 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 ARL5CA6NH57 179 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 EDIL3O43854 480 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 B4GALT3O60512 393 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 XBP1P17861 261 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 HOXA11P31270 313 aaPredicted RBP13.67□□□□□ -0.22
SNHG1-216ENST00000541416 HSPA4P34932 840 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 EVCP57679 992 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 DSG1Q02413 1049 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 USP41Q3LFD5 358 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 KIAA0319Q5VV43 1072 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 C4orf19Q8IY42 314 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 COLGALT2Q8IYK4 626 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 DAGLBQ8NCG7 672 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 TMEM143Q96AN5 459 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 BORCS6Q96GS4 357 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 NCOA5Q9HCD5 579 aaKnown RBP13.67□□□□□ -0.22
SNHG1-216ENST00000541416 ARHGEF3Q9NR81 526 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 GIT1Q9Y2X7 761 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 IPPQ9Y573 584 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 SNX14Q9Y5W7 946 aa13.67□□□□□ -0.22
SNHG1-216ENST00000541416 ZNF292O60281 2723 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 KRBA1A5PL33 1030 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 TBX3O15119 743 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 N4BP1O75113 896 aaKnown RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 RFPL2O75678 378 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 REC8O95072 547 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 YWHABP31946 246 aaKnown RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 MLH1P40692 756 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 AFF1P51825 1210 aaKnown RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 NPEPPSP55786 919 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 EMC2Q15006 297 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 UBXN11Q5T124 520 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 PPP4R3AQ6IN85 833 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 CENPQQ7L2Z9 268 aaPredicted RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 GET4Q7L5D6 327 aaPredicted RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 FERMT3Q86UX7 667 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 RSAD2Q8WXG1 361 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 CCDC43Q96MW1 224 aaKnown RBP13.66□□□□□ -0.22
SNHG1-216ENST00000541416 GAD1Q99259 594 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 MTRQ99707 1265 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 PRKD2Q9BZL6 878 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 ZSWIM4Q9H7M6 989 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 MINDY3Q9H8M7 445 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 MARCH5Q9NX47 278 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 FNIP2Q9P278 1114 aa13.66□□□□□ -0.22
SNHG1-216ENST00000541416 INO80B-WBP1J3KQ70 363 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 PAPLNO95428 1278 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 BAG4O95429 457 aaKnown RBP13.65□□□□□ -0.22
SNHG1-216ENST00000541416 LAMP2P13473 410 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 POU5F1BQ06416 359 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 DSC1Q08554 894 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 EPHA7Q15375 998 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 INF2Q27J81 1249 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 XKR9Q5GH70 373 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 SPECC1Q5M775 1068 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 DCLRE1AQ6PJP8 1040 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 TAS1R1Q7RTX1 841 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 DGLUCYQ7Z3D6 616 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 NEK8Q86SG6 692 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 PALB2Q86YC2 1186 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 C1orf210Q8IVY1 113 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 SLFN12Q8IYM2 578 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 RNF168Q8IYW5 571 aaPredicted RBP13.65□□□□□ -0.22
SNHG1-216ENST00000541416 SMG8Q8ND04 991 aaKnown RBP13.65□□□□□ -0.22
SNHG1-216ENST00000541416 GPR152Q8TDT2 470 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 RUBCNQ92622 972 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 MYADMQ96S97 322 aa13.65□□□□□ -0.22
SNHG1-216ENST00000541416 LXNQ9BS40 222 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms