RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 PARP9Q8IXQ6 854 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ANKRD35Q8N283 1001 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 USP38Q8NB14 1042 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 DDX12PQ92771 950 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 AIPL1Q9NZN9 384 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 DMGDHQ9UI17 866 aaKnown RBP11.26□□□□□ -0.61
CHFR-219ENST00000541341 RASAL2Q9UJF2 1139 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 ODF2LQ9ULJ1 636 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 SIK3Q9Y2K2 1263 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 KDM3AQ9Y4C1 1321 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 CUL9Q8IWT3 2517 aa11.26□□□□□ -0.61
CHFR-219ENST00000541341 TRIP12Q14669 1992 aaPredicted RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 PGRMC1O00264 195 aaKnown RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 KIAA0355O15063 1070 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 ASAP2O43150 1006 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TRAPPC3O43617 180 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 MOCS3O95396 460 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 ASGR1P07306 291 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 FXR2P51116 673 aaKnown RBP eCLIP11.25□□□□□ -0.61
CHFR-219ENST00000541341 SMAD3P84022 425 aaKnown RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 CNTN2Q02246 1040 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 PDCLQ13371 301 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 BYSLQ13895 437 aaKnown RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 ASTE1Q2TB18 679 aaPredicted RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 CCDC38Q502W7 563 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TDRD12Q587J7 1177 aaKnown RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 TTMPQ5BVD1 217 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 KLHDC7AQ5VTJ3 777 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 RRAGAQ7L523 313 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 CPLX4Q7Z7G2 160 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 NEK8Q86SG6 692 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 FAM160B2Q86V87 743 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 CCDC13Q8IYE1 715 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 CFAP61Q8NHU2 1237 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 IFT74Q96LB3 600 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 MTRQ99707 1265 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.25□□□□□ -0.619e-6■■■■■ 27.7
CHFR-219ENST00000541341 SPZ1Q9BXG8 430 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TLR10Q9BXR5 811 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TEX13BQ9BXU2 312 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 RIOX1Q9H6W3 641 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 RNF216Q9NWF9 866 aaPredicted RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 BARHL2Q9NY43 387 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 ARHGAP20Q9P2F6 1191 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TRIM10Q9UDY6 481 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 FEM1BQ9UK73 627 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 FBXL5Q9UKA1 691 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 TTC7AQ9ULT0 858 aaPredicted RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 UTP11Q9Y3A2 253 aaKnown RBP11.25□□□□□ -0.61
CHFR-219ENST00000541341 COL4A3BPQ9Y5P4 624 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 MYH10P35580 1976 aa11.25□□□□□ -0.61
CHFR-219ENST00000541341 A0A0U1RQJ8 604 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 DCDC2CA8MYV0 355 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 ZNF185O15231 689 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 ZBED4O75132 1171 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 LUC7L3O95232 432 aaKnown RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 FDX1P10109 184 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 MYBP10242 640 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 DNAJB2P25686 324 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 CTNNA1P35221 906 aaKnown RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 STAT2P52630 851 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 DRG2P55039 364 aaKnown RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 IRX1P78414 480 aaPredicted RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 IKQ13123 557 aaPredicted RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 ACVR2BQ13705 512 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 HLTFQ14527 1009 aaKnown RBP eCLIP11.24□□□□□ -0.61
CHFR-219ENST00000541341 C1orf53Q5VUE5 145 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 KRT79Q5XKE5 535 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 PPP1R18Q6NYC8 613 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 CCDC174Q6PII3 467 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 CEP128Q6ZU80 1094 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 ARMCX2Q7L311 632 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 TAOK1Q7L7X3 1001 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 CCDC65Q8IXS2 484 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 STAG2Q8N3U4 1231 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 SRBD1Q8N5C6 995 aaKnown RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 CHURC1Q8WUH1 139 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 IFT81Q8WYA0 676 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 RIN2Q8WYP3 895 aaPredicted RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 MTMR8Q96EF0 704 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 CYFIP2Q96F07 1278 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 FGD4Q96M96 766 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 JPH2Q9BR39 696 aaPredicted RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 ZMYND12Q9H0C1 365 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 SAMD15Q9P1V8 674 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 SEC63Q9UGP8 760 aaKnown RBP11.24□□□□□ -0.61
CHFR-219ENST00000541341 MCM8Q9UJA3 840 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 TMEM59LQ9UK28 342 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 NFU1Q9UMS0 254 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 PLAAQ9Y263 795 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 MYH7BA7E2Y1 1941 aa11.24□□□□□ -0.61
CHFR-219ENST00000541341 PTPRSQ13332 1948 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 LOC102724159A0A0B4J2E5 919 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 FAM187AA6NFU0 413 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 KLRF2D3W0D1 207 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 M0R2N6 131 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 CYTH3O43739 400 aa11.23□□□□□ -0.61
CHFR-219ENST00000541341 PLEKHA8P1O95397 391 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms