RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 EXTL3O43909 919 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 RPLP2P05387 115 aaKnown RBP19.33■□□□□ 0.69
CLIP1-215ENST00000541108 TPM1P09493 284 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 SFPQP23246 707 aaKnown RBP eCLIP19.33■□□□□ 0.69
CLIP1-215ENST00000541108 SYCP1Q15431 976 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 TSHZ1Q6ZSZ6 1077 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 USP37Q86T82 979 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 NLRP7Q8WX94 980 aa19.33■□□□□ 0.69
CLIP1-215ENST00000541108 AGO2Q9UKV8 859 aaKnown RBP19.33■□□□□ 0.69
CLIP1-215ENST00000541108 HTTP42858 3142 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 MOXD2PA6NHM9 499 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 PRPF4BQ13523 1007 aaKnown RBP19.33■□□□□ 0.68
CLIP1-215ENST00000541108 DCAF17Q5H9S7 520 aaPredicted RBP19.33■□□□□ 0.68
CLIP1-215ENST00000541108 TCERG1LQ5VWI1 586 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 CACTINQ8WUQ7 758 aaKnown RBP19.33■□□□□ 0.68
CLIP1-215ENST00000541108 MFSD14AQ96MC6 490 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 ADAMTS10Q9H324 1103 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 MINDY3Q9H8M7 445 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 SIK3Q9Y2K2 1263 aa19.33■□□□□ 0.68
CLIP1-215ENST00000541108 GPR32O75388 356 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 EDN1P05305 212 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 VAMP7P51809 220 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 RBL2Q08999 1139 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 ARRDC4Q8NCT1 418 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 TMC2Q8TDI7 906 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 PTPRHQ9HD43 1115 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 TNFSF13BQ9Y275 285 aa19.32■□□□□ 0.68
CLIP1-215ENST00000541108 ZNF233A6NK53 670 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 AKR1B15C9JRZ8 316 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 GYPCP04921 128 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 IQCF3P0C7M6 154 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 TRIM21P19474 475 aaKnown RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 PROZP22891 400 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 ACLYP53396 1101 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 PTPN11Q06124 597 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 MCL1Q07820 350 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 CBWD2Q8IUF1 395 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 CNGA4Q8IV77 575 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 SAAL1Q96ER3 474 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 ZNF668Q96K58 619 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 SCLT1Q96NL6 688 aa19.31■□□□□ 0.68
CLIP1-215ENST00000541108 GCOM2Q9BZD3 368 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 FAM49AQ9H0Q0 323 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 TRIP12Q14669 1992 aaPredicted RBP19.31■□□□□ 0.68
CLIP1-215ENST00000541108 GOLGA8IPA6NC78 632 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 GOLGA8JA6NMD2 632 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 PMM2O15305 246 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ZNF200P98182 395 aaPredicted RBP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 KCNMA1Q12791 1236 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 AMHR2Q16671 573 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ATF7IP2Q5U623 682 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 RUFY4Q6ZNE9 571 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 TC2NQ8N9U0 490 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ZSWIM2Q8NEG5 633 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 PARD3BQ8TEW8 1205 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 DNAJB3Q8WWF6 145 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CCDC51Q96ER9 411 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ZBTB45Q96K62 511 aaPredicted RBP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 TCHPQ9BT92 498 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 MSTO1Q9BUK6 570 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 TTYH3Q9C0H2 523 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 HAPLN2Q9GZV7 340 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CAPN11Q9UMQ6 739 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 USP20Q9Y2K6 914 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CNTNAP2Q9UHC6 1331 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 A0A1W2PQJ5 194 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 TTLL13PA6NNM8 815 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ABLIM1O14639 778 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 P4HA2O15460 535 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 NRDCO43847 1150 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 STX10O60499 249 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 N4BP1O75113 896 aaKnown RBP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 MYCNP04198 464 aaPredicted RBP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ADRB2P07550 413 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CASP14P31944 242 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 MATR3P43243 847 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 FMO5P49326 533 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ARID5BQ14865 1188 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 MPZL3Q6UWV2 235 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 RPAINQ86UA6 219 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CCDC155Q8N6L0 562 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 PPP1R13LQ8WUF5 828 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 PCMTD1Q96MG8 357 aaPredicted RBP19.3■□□□□ 0.68
CLIP1-215ENST00000541108 GLT1D1Q96MS3 346 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 FAM213AQ9BRX8 229 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 EDEM3Q9BZQ6 932 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 KCNF1Q9H3M0 494 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ANKFY1Q9P2R3 1169 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 ZKSCAN5Q9Y2L8 839 aa19.3■□□□□ 0.68
CLIP1-215ENST00000541108 CYP24A1Q07973 514 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 KIZQ2M2Z5 673 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 GDF6Q6KF10 455 aaPredicted RBP19.29■□□□□ 0.68
CLIP1-215ENST00000541108 GBP6Q6ZN66 633 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 CCDC112Q8NEF3 446 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 SH3TC2Q8TF17 1288 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 ZNF830Q96NB3 372 aaPredicted RBP19.29■□□□□ 0.68
CLIP1-215ENST00000541108 PANX2Q96RD6 677 aa19.29■□□□□ 0.68
CLIP1-215ENST00000541108 MMRN2Q9H8L6 949 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms