RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 FAM212AQ96EL1 285 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 ACCSQ96QU6 501 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 ACO2Q99798 780 aaKnown RBP11.58□□□□□ -0.56
VPS33A-204ENST00000540669 LBHD1Q9BQE6 289 aaPredicted RBP11.58□□□□□ -0.56
VPS33A-204ENST00000540669 GCOM2Q9BZD3 368 aaPredicted RBP11.58□□□□□ -0.56
VPS33A-204ENST00000540669 GBP3Q9H0R5 595 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 ZHX3Q9H4I2 956 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 TMEM206Q9H813 350 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 AGO3Q9H9G7 860 aaKnown RBP11.58□□□□□ -0.56
VPS33A-204ENST00000540669 TNFSF13BQ9Y275 285 aa11.58□□□□□ -0.56
VPS33A-204ENST00000540669 NOC2LQ9Y3T9 749 aaKnown RBP11.58□□□□□ -0.56
VPS33A-204ENST00000540669 TTC3P53804 2025 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 RANBP2P49792 3224 aaKnown RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 PDE4DIPQ5VU43 2346 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 A0A1B0GUA9 196 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 TRIM49BA6NDI0 452 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 CCDC169A6NNP5 214 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 DCDC2CA8MYV0 355 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 ANKRD63C9JTQ0 380 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 NBNO60934 754 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 TOM1L1O75674 476 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 KIF20AO95235 890 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 SRGAP2CP0DJJ0 459 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 ARF4P18085 180 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 ITGB8P26012 769 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 THPOP40225 353 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 MARSP56192 900 aaKnown RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 CHMP4BP1P59074 171 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 MCL1Q07820 350 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 BFSP2Q13515 415 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 MAPK6Q16659 721 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 DHX40Q8IX18 779 aaKnown RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 GOLGA5Q8TBA6 731 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 NLRP7Q8WX94 980 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 LINC01599Q8WXQ3 324 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 CCDC51Q96ER9 411 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 MRPL4Q9BYD3 311 aaKnown RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 GZF1Q9H116 711 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-204ENST00000540669 TMX1Q9H3N1 280 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 PDZD7Q9H5P4 517 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 DACH1Q9UI36 760 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 ATP11BQ9Y2G3 1177 aa11.57□□□□□ -0.56
VPS33A-204ENST00000540669 A0A0B4J269 797 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 TRIM43BA6NCK2 446 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 INO80B-WBP1J3KQ70 363 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 K7ERI5 159 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 MAPK13O15264 365 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 MEFVO15553 781 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 PARNO95453 639 aaKnown RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 ADRB2P07550 413 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CTSHP09668 335 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 GARTP22102 1010 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 SFPQP23246 707 aaKnown RBP eCLIP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 AXLP30530 894 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 MYL5Q02045 173 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 ENPEPQ07075 957 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 PLEKHG4Q58EX7 1191 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 UBXN11Q5T124 520 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 EEF1DP3Q658K8 133 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 ANKRD40Q6AI12 368 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 APTXQ7Z2E3 356 aaKnown RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CRIPAKQ8N1N5 446 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 NELFBQ8WX92 580 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 TRIM43Q96BQ3 446 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 BORCS6Q96GS4 357 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 ZNF668Q96K58 619 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 TARS2Q9BW92 718 aaKnown RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 INO80BQ9C086 356 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CDT1Q9H211 546 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 HIPK3Q9H422 1215 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 TSPY26PQ9H489 355 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CBX8Q9HC52 389 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 PRDM5Q9NQX1 630 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CTNND2Q9UQB3 1225 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 MAPK8IP1Q9UQF2 711 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 NOD1Q9Y239 953 aa11.56□□□□□ -0.56
VPS33A-204ENST00000540669 CHD9Q3L8U1 2897 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 LAMA2P24043 3122 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 BICDL2A1A5D9 508 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 FSD2A1L4K1 749 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 RBAK-RBAKDNI3L0D1 243 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 HNRNPDLO14979 420 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 KIAA0391O15091 583 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 CSDE1O75534 798 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 RFC2P35250 354 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 ZNF165P49910 485 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 POU5F1Q01860 360 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 PRPF4BQ13523 1007 aaKnown RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 STIM1Q13586 685 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 TCTN1Q2MV58 587 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 MPZL3Q6UWV2 235 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 CRELD2Q6UXH1 353 aaPredicted RBP11.55□□□□□ -0.56
VPS33A-204ENST00000540669 NELFCDQ8IXH7 590 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 CEP63Q96MT8 703 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 PPP1R16BQ96T49 567 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 CBWD1Q9BRT8 395 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 ANP32EQ9BTT0 268 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 MKNK1Q9BUB5 465 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 CHST12Q9NRB3 414 aa11.55□□□□□ -0.56
VPS33A-204ENST00000540669 PADI3Q9ULW8 664 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms