RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 ATMINO43313 823 aaPredicted RBP13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 WFS1O76024 890 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 CBX6O95503 412 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 NTSR2O95665 410 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 TRIM49P0CI25 452 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 TRIM49CP0CI26 452 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ADCY8P40145 1251 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 RANBP1P43487 201 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PPATQ06203 517 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 LAMB3Q13751 1172 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 MTFR1Q15390 333 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PDCD2Q16342 344 aaPredicted RBP13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 RNF220Q5VTB9 566 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 RNF43Q68DV7 783 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PALB2Q86YC2 1186 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ANKRD35Q8N283 1001 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 SYT15Q9BQS2 421 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ZSWIM1Q9BR11 485 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 STK33Q9BYT3 514 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 TYW1Q9NV66 732 aaKnown RBP13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 USH1CQ9Y6N9 552 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 NCANO14594 1321 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 TCRBV7S2A1N4TA0A589 114 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PDXKO00764 312 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PEX11AO75192 247 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 TPBGLP0DKB5 382 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 KRT15P19012 456 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 RFC4P35249 363 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 SKIV2L2P42285 1042 aaKnown RBP13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 CCDC24Q8N4L8 307 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ZNF513Q8N8E2 541 aaPredicted RBP13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PPFIBP2Q8ND30 876 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 KIAA1683Q9H0B3 1180 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ANKIB1Q9P2G1 1089 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 STOML1Q9UBI4 398 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 PCYOX1Q9UHG3 505 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 COG5Q9UP83 839 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 ZNF652Q9Y2D9 606 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 EP400Q96L91 3159 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 A0A1B0GVG6 124 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 POLGP54098 1239 aaPredicted RBP13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CAPN12Q6ZSI9 719 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 FBXO33Q7Z6M2 555 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 RPUSD2Q8IZ73 545 aaKnown RBP13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CERKQ8TCT0 537 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 FGD4Q96M96 766 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 GBP5Q96PP8 586 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 TBC1D10AQ9BXI6 508 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PSTPIP2Q9H939 334 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 SIX2Q9NPC8 291 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PCDHA2Q9Y5H9 948 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 UBR2Q8IWV8 1755 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 RSPH10B2B2RC85 870 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 MED24O75448 989 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 DCTN3O75935 186 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 FAM13AO94988 1023 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 RSPH10BP0C881 870 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PYGMP11217 842 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 SKIP12755 728 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CCNB1P14635 433 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CNGA1P29973 690 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PSMC2P35998 433 aaKnown RBP13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 JAM2P57087 298 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 MGAT5Q09328 741 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 STMN2Q93045 179 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 ART4Q93070 314 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 C9orf72Q96LT7 481 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PLVAPQ9BX97 442 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 TRAF3IP3Q9Y228 551 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 ATF2P15336 505 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CHKAP35790 457 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC16A2P36021 539 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 KCNA1Q09470 495 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 MPP2Q14168 576 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 C3orf67Q6ZVT6 689 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 CYFIP1Q7L576 1253 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 HS2ST1Q7LGA3 356 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 SUPT20HQ8NEM7 779 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 FBXO41Q8TF61 875 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 UTP4Q969X6 686 aaKnown RBP13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 MXD3Q9BW11 206 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 ANAPC5Q9UJX4 755 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 PHTF1Q9UMS5 762 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 FRMD4BQ9Y2L6 1034 aa13.74□□□□□ -0.21
SFSWAP-209ENST00000540469 POC1B-GALNT4F8VUJ3 575 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 CLDN3O15551 220 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 CRKLP46109 303 aaKnown RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 PPP1R15BQ5SWA1 713 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 MIGA2Q7L4E1 593 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC13A5Q86YT5 568 aaPredicted RBP13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 MYCT1Q8N699 235 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 MCUR1Q96AQ8 359 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 BTBD6Q96KE9 485 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 BHMT2Q9H2M3 363 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 LRRC42Q9Y546 428 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 GAS8O95995 478 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 PSMC6P62333 389 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 MYL7Q01449 175 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 PRR16Q569H4 304 aa13.73□□□□□ -0.21
SFSWAP-209ENST00000540469 HHATQ5VTY9 493 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms