RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 VRK3Q8IV63 474 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 OR52N2Q8NGI0 321 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 PDCD2LQ9BRP1 358 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 ZNF768Q9H5H4 540 aaKnown RBP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 PRSS50Q9UI38 385 aa5.13□□□□□ -1.59
VPS13A-213ENST00000539950 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS13A-213ENST00000539950 A0A087X0B3 334 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 AHRRA9YTQ3 701 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 NRP2O60462 931 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 NRG3P56975 720 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 VPS72Q15906 364 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 DDB1Q16531 1140 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 CCDC178Q5BJE1 867 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 CCDC62Q6P9F0 684 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 FAM83AQ86UY5 434 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 C11orf74Q86VG3 221 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 LEO1Q8WVC0 666 aaPredicted RBP5.12□□□□□ -1.59
VPS13A-213ENST00000539950 FZD1Q9UP38 647 aa5.12□□□□□ -1.59
VPS13A-213ENST00000539950 TMEM191CA6NGB0 347 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 TRIM24O15164 1050 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 TMEM127O75204 238 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 ABHD16AO95870 558 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 APOBEC3AP31941 199 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-213ENST00000539950 WNT3AP56704 352 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 NANOS3P60323 173 aaKnown RBP5.11□□□□□ -1.59
VPS13A-213ENST00000539950 FAM189BP81408 668 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 CSRP2Q16527 193 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 PITRM1Q5JRX3 1037 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 METTL24Q5JXM2 366 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 MBNL2Q5VZF2 373 aaKnown RBP5.11□□□□□ -1.59
VPS13A-213ENST00000539950 ABHD15Q6UXT9 468 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 LRRC55Q6ZSA7 311 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 DOK3Q7L591 496 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 GLB1L2Q8IW92 636 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 SYNE4Q8N205 404 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 GLB1L3Q8NCI6 653 aaPredicted RBP5.11□□□□□ -1.59
VPS13A-213ENST00000539950 PROKR1Q8TCW9 393 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 SLC5A5Q92911 643 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 KCNH6Q9H252 994 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 EIF2B4Q9UI10 523 aaKnown RBP5.11□□□□□ -1.59
VPS13A-213ENST00000539950 HS3ST4Q9Y661 456 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 ZMYM3Q14202 1370 aa5.11□□□□□ -1.59
VPS13A-213ENST00000539950 PDE8AO60658 829 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 PRAMEF4O60810 478 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 RAB11FIP3O75154 756 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 RECQL4O94761 1208 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 ITGB1P05556 798 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 LPLP06858 475 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 LTA4HP09960 611 aaKnown RBP5.1□□□□□ -1.59
VPS13A-213ENST00000539950 MYCLP1P12525 358 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-213ENST00000539950 GYPEP15421 78 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 PROZP22891 400 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 CT83Q5H943 113 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 GPRIN1Q7Z2K8 1008 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 RASSF3Q86WH2 238 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 LILRA3Q8N6C8 439 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-213ENST00000539950 OR14C36Q8NHC7 312 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 ZG16BQ96DA0 208 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 NDC1Q9BTX1 674 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 WNT8AQ9H1J5 351 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 HDAC5Q9UQL6 1122 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 CDY2AQ9Y6F7 541 aa5.1□□□□□ -1.59
VPS13A-213ENST00000539950 LEFTY2O00292 366 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 BPIP17213 487 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 LGALS4P56470 323 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 PDCD1Q15116 288 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 ATP13A4Q4VNC1 1196 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 PLEKHG4Q58EX7 1191 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 LY6G5CQ5SRR4 150 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 ANKS6Q68DC2 871 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 SYT12Q8IV01 421 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 DNAJC10Q8IXB1 793 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 GPR150Q8NGU9 434 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 FAM193BQ96PV7 902 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-213ENST00000539950 KCTD10Q9H3F6 313 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 KCNG1Q9UIX4 513 aa5.09□□□□□ -1.59
VPS13A-213ENST00000539950 NOC2LQ9Y3T9 749 aaKnown RBP5.09□□□□□ -1.59
VPS13A-213ENST00000539950 GRID2IPA4D2P6 1211 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 LPXNO60711 386 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 ITGA10O75578 1167 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 GCP02774 474 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 CANXP27824 592 aaKnown RBP5.08□□□□□ -1.6
VPS13A-213ENST00000539950 ID4P47928 161 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 APBA1Q02410 837 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 PTPAQ15257 358 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 TIGD2Q4W5G0 525 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 KCNV1Q6PIU1 500 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 BTNL9Q6UXG8 535 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 ZNF575Q86XF7 245 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 MDM1Q8TC05 714 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 SNX33Q8WV41 574 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 RSAD2Q8WXG1 361 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 SLC46A2Q9BY10 475 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 SPON1Q9HCB6 807 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 TOPORSQ9NS56 1045 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-213ENST00000539950 TRPM5Q9NZQ8 1165 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 EDARQ9UNE0 448 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 MAPRE3Q9UPY8 281 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 CHST2Q9Y4C5 530 aa5.08□□□□□ -1.6
VPS13A-213ENST00000539950 COL4A3Q01955 1670 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms