RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 LRRC27Q9C0I9 530 aa14.29□□□□□ -0.12
CCDC42-202ENST00000539522 SLC39A2Q9NP94 309 aa14.29□□□□□ -0.12
CCDC42-202ENST00000539522 SEL1LQ9UBV2 794 aa14.29□□□□□ -0.12
CCDC42-202ENST00000539522 PIN4Q9Y237 131 aaKnown RBP14.29□□□□□ -0.12
CCDC42-202ENST00000539522 GDAQ9Y2T3 454 aa14.29□□□□□ -0.12
CCDC42-202ENST00000539522 PRPF6O94906 941 aaKnown RBP14.28□□□□□ -0.12
CCDC42-202ENST00000539522 ADSSP30520 456 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 GATMP50440 423 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 AFF1P51825 1210 aaKnown RBP14.28□□□□□ -0.12
CCDC42-202ENST00000539522 EFNA5P52803 228 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 PRPF4BQ13523 1007 aaKnown RBP14.28□□□□□ -0.12
CCDC42-202ENST00000539522 GSE1Q14687 1217 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 PDCD11Q14690 1871 aaKnown RBP14.28□□□□□ -0.12
CCDC42-202ENST00000539522 TRIP11Q15643 1979 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 CAMK4Q16566 473 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 MAPK6Q16659 721 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 FAM26FQ5R3K3 315 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 TDHQ8IZJ6 230 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 ZSWIM2Q8NEG5 633 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 ZNF507Q8TCN5 953 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 TOP1MTQ969P6 601 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 NUP62CLQ9H1M0 184 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 RNF39Q9H2S5 420 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 CLSTN2Q9H4D0 955 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 MRPL44Q9H9J2 332 aaKnown RBP14.28□□□□□ -0.12
CCDC42-202ENST00000539522 CHST12Q9NRB3 414 aa14.28□□□□□ -0.12
CCDC42-202ENST00000539522 A0A0U1RQF3 1178 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 TGFB1I1O43294 461 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 LINC00271P0C7V0 271 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 ZNF445P59923 1031 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 KCNB1Q14721 858 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 PCBP1Q15365 356 aaKnown RBP eCLIP14.27□□□□□ -0.13
CCDC42-202ENST00000539522 BMT2Q1RMZ1 405 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 ZBTB41Q5SVQ8 909 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 L1TD1Q5T7N2 865 aaKnown RBP14.27□□□□□ -0.13
CCDC42-202ENST00000539522 KANK3Q6NY19 840 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 MRPL10Q7Z7H8 261 aaKnown RBP14.27□□□□□ -0.13
CCDC42-202ENST00000539522 ECHDC2Q86YB7 292 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 TMEM192Q8IY95 271 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 SMYD4Q8IYR2 804 aaPredicted RBP14.27□□□□□ -0.13
CCDC42-202ENST00000539522 CEP120Q8N960 986 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 LPPQ93052 612 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 FTHL17Q9BXU8 183 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 FAM105AQ9NUU6 356 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 MAN1B1Q9UKM7 699 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 TNFSF13BQ9Y275 285 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 HES2Q9Y543 173 aa14.27□□□□□ -0.13
CCDC42-202ENST00000539522 LCHNA4D1U4 455 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 SOX1O00570 391 aaPredicted RBP14.26□□□□□ -0.13
CCDC42-202ENST00000539522 ERLIN2O94905 339 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 GCNT3O95395 438 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 MYOGP15173 224 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 CD44P16070 742 aaKnown RBP14.26□□□□□ -0.13
CCDC42-202ENST00000539522 AXLP30530 894 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 PBX2P40425 430 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 RABGGTBP53611 331 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 SMTNP53814 917 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 CLLU1OSQ5K130 101 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 ATF7IP2Q5U623 682 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 AGMOQ6ZNB7 445 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 SLC24A5Q71RS6 500 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 SPRED2Q7Z698 418 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 ZNF689Q96CS4 500 aaPredicted RBP14.26□□□□□ -0.13
CCDC42-202ENST00000539522 RNPC3Q96LT9 517 aaKnown RBP14.26□□□□□ -0.13
CCDC42-202ENST00000539522 CDT1Q9H211 546 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 NXF3Q9H4D5 531 aaKnown RBP14.26□□□□□ -0.13
CCDC42-202ENST00000539522 HCSTQ9UBK5 93 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 PCDHB2Q9Y5E7 798 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 STYXL1Q9Y6J8 313 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 RALGAPA2Q2PPJ7 1873 aa14.26□□□□□ -0.13
CCDC42-202ENST00000539522 ZBBXA8MT70 800 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 B4GALT3O60512 393 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 ZNF623O75123 536 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 NPTXRO95502 500 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 FGFR1P11362 822 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 ACTN1P12814 892 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 HTRA4P83105 476 aaPredicted RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 MORC3Q14149 939 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 SEZ6Q53EL9 994 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 ISM2Q6H9L7 571 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 TWF2Q6IBS0 349 aaKnown RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 NOTUMQ6P988 496 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 SLC27A1Q6PCB7 646 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 ZPBP2Q6X784 338 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 RBM43Q6ZSC3 357 aaKnown RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 HERC6Q8IVU3 1022 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 GSTCDQ8NEC7 633 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 HVCN1Q96D96 273 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 CCDC34Q96HJ3 373 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 MRPL4Q9BYD3 311 aaKnown RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 KCTD10Q9H3F6 313 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 HOOK1Q9UJC3 728 aaKnown RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 YBX2Q9Y2T7 364 aaKnown RBP14.25□□□□□ -0.13
CCDC42-202ENST00000539522 IPPQ9Y573 584 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 SLC4A7Q9Y6M7 1214 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 NLRC5Q86WI3 1866 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 TRANK1O15050 2925 aa14.25□□□□□ -0.13
CCDC42-202ENST00000539522 REV3LO60673 3130 aa14.24□□□□□ -0.13
CCDC42-202ENST00000539522 A0A0B4J269 797 aa14.24□□□□□ -0.13
CCDC42-202ENST00000539522 SYCE3A1L190 88 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms