RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 PBKQ96KB5 322 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.56□□□□□ -0.241e-8■■■■□ 22.3
SFSWAP-208ENST00000539506 MKNK1Q9BUB5 465 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 PDGFDQ9GZP0 370 aaPredicted RBP13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 VEZTQ9HBM0 779 aa13.56□□□□□ -0.24
SFSWAP-208ENST00000539506 A0A0A6YYK5 440 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 MMEP08473 750 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PSEN1P49768 467 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CPNE8Q86YQ8 564 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CD302Q8IX05 232 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 KCTD17Q8N5Z5 321 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PLEKHO2Q8TD55 490 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 MXRA8Q9BRK3 442 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 KCNH7Q9NS40 1196 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 SUCLA2Q9P2R7 463 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PGAP2Q9UHJ9 254 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CREB1P16220 341 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CAP2P40123 477 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PPATQ06203 517 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 C1orf220Q5T0J3 134 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 EPS8L3Q8TE67 593 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 SLC20A1Q8WUM9 679 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PSMD1Q99460 953 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 LBHD1Q9BQE6 289 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 THAP2Q9H0W7 228 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 APEX2Q9UBZ4 518 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 TRIM33Q9UPN9 1127 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 MRPL11Q9Y3B7 192 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 DDX3YO15523 660 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 DRD4P21917 467 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PPP3CAQ08209 521 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 BFSP1Q12934 665 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 SLC29A2Q14542 456 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 SPDYE2Q495Y8 402 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PREPLQ4J6C6 727 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 TBC1D10BQ4KMP7 808 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 PADI6Q6TGC4 694 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CHURC1Q8WUH1 139 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 SGSM3Q96HU1 749 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 CBWD1Q9BRT8 395 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 TEKT3Q9BXF9 490 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 ABCF3Q9NUQ8 709 aa13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 UTP11Q9Y3A2 253 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-208ENST00000539506 ANXA13P27216 316 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 PTGER2P43116 358 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 KCNJ1P48048 391 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 DLGAP5Q15398 846 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 ZKSCAN8Q15776 578 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 RUFY4Q6ZNE9 571 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 ARHGEF19Q8IW93 802 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 FBXO25Q8TCJ0 367 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 CLEC4DQ8WXI8 215 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 POP1Q99575 1024 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 SEMA4AQ9H3S1 761 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 ZNF277Q9NRM2 450 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 SEL1LQ9UBV2 794 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 INTUQ9ULD6 942 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 FRMD4BQ9Y2L6 1034 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 ZHX2Q9Y6X8 837 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 EXOC3O60645 756 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 HSD17B4P51659 736 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 KCNJ2P63252 427 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 MRPS9P82933 396 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 POU5F1Q01860 360 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 SEPT14Q6ZU15 432 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 HS2ST1Q7LGA3 356 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 KAT5Q92993 513 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 TATDN2Q93075 761 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 C18orf8Q96DM3 657 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 FMO2Q99518 471 aa13.54□□□□□ -0.24
SFSWAP-208ENST00000539506 ARHGEF35A5YM69 484 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 PEX19P40855 299 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 MYL7Q01449 175 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 IFI16Q16666 785 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ZNF746Q6NUN9 644 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 RPAINQ86UA6 219 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 VPS36Q86VN1 386 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ANKRD42Q8N9B4 389 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 KCNV2Q8TDN2 545 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 XPO6Q96QU8 1125 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ADAM33Q9BZ11 813 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 NOD2Q9HC29 1040 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ACP6Q9NPH0 428 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 AGAP1Q9UPQ3 857 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 EZRP15311 586 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 MARCKSL1P49006 195 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 NPEPPSP55786 919 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ELF3P78545 371 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 TNIP1Q15025 636 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 UGCGQ16739 394 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 SLC9A9Q8IVB4 645 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 CCT6BQ92526 530 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 RNF25Q96BH1 459 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 CHMP6Q96FZ7 201 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 GPRC5CQ9NQ84 441 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 DONSONQ9NYP3 566 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 TMOD2Q9NZR1 351 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 NCANO14594 1321 aa13.53□□□□□ -0.24
SFSWAP-208ENST00000539506 ATP8B3O60423 1300 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms