RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SLC7A3	Q8WY07	619 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	KLHL5	Q96PQ7	755 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	SH2D3A	Q9BRG2	576 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	EMILIN2	Q9BXX0	1053 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	TM6SF1	Q9BZW5	370 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	DHX33	Q9H6R0	707 aa	Known RBP	12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	SFXN1	Q9H9B4	322 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	KCNMB3	Q9NPA1	279 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	DNAJB4	Q9UDY4	337 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	DDX25	Q9UHL0	483 aa	Known RBP	12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	DBR1	Q9UK59	544 aa	Known RBP	12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647	COL4A3BP	Q9Y5P4	624 aa		12.91	□□□□□ -0.34
CTNND1-238	ENST00000534647		H0Y858	1186 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	EML1	O00423	815 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	CPLX1	O14810	134 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	TBX3	O15119	743 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	GAS2	O43903	313 aa	Known RBP	12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	B4GALT3	O60512	393 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	DDHD2	O94830	711 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	PAPLN	O95428	1278 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	EFEMP2	O95967	443 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	WEE2	P0C1S8	567 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	GCFC2	P16383	781 aa	Known RBP	12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	CYP26C1	Q6V0L0	522 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	OTOP3	Q7RTS5	596 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	C4orf19	Q8IY42	314 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	TMEM105	Q8N8V8	129 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	CNNM3	Q8NE01	707 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	CMAS	Q8NFW8	434 aa	Predicted RBP	12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	URGCP	Q8TCY9	931 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	PRPF31	Q8WWY3	499 aa	Known RBP	12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	ACSF2	Q96CM8	615 aa	Predicted RBP	12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	NLRP4	Q96MN2	994 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	RSAD1	Q9HA92	442 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	PRM3	Q9NNZ6	103 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	UBN1	Q9NPG3	1134 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	VAV3	Q9UKW4	847 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	SSX2IP	Q9Y2D8	614 aa		12.9	□□□□□ -0.34
CTNND1-238	ENST00000534647	SLC37A4	O43826	429 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	ASGR2	P07307	311 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	CNP	P09543	421 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	NCL	P19338	710 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	CA8	P35219	290 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	NPEPPS	P55786	919 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	POU5F1B	Q06416	359 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	LAMTOR4	Q0VGL1	99 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	INF2	Q27J81	1249 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	LONRF3	Q496Y0	759 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	UBXN11	Q5T124	520 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	KANK3	Q6NY19	840 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	CPLX2	Q6PUV4	134 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	PSPC1	Q8WXF1	523 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	CEP170P1	Q96L14	293 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	NAP1L4	Q99733	375 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	PHF20	Q9BVI0	1012 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	MINDY3	Q9H8M7	445 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	MRPL17	Q9NRX2	175 aa	Known RBP	12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	FAM86C1	Q9NVL1	165 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	INPP5F	Q9Y2H2	1132 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	FAN1	Q9Y2M0	1017 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	CYP46A1	Q9Y6A2	500 aa		12.89	□□□□□ -0.35
CTNND1-238	ENST00000534647	NRP1	O14786	923 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	SOD2	P04179	222 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	KLRC2	P26717	231 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	AXL	P30530	894 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	AFF1	P51825	1210 aa	Known RBP	12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	TDG	Q13569	410 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	EPHA7	Q15375	998 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	PLA2G4F	Q68DD2	849 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	TMC5	Q6UXY8	1006 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	CCDC149	Q6ZUS6	474 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	OTUD6A	Q7L8S5	288 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	NEK8	Q86SG6	692 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	GPR65	Q8IYL9	337 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	RNF168	Q8IYW5	571 aa	Predicted RBP	12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	HDAC7	Q8WUI4	952 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	TCP11	Q8WWU5	503 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	HAS1	Q92839	578 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	SNX27	Q96L92	541 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	FAM193B	Q96PV7	902 aa	Predicted RBP	12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	GBP3	Q9H0R5	595 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	SMOC2	Q9H3U7	446 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	RXFP1	Q9HBX9	757 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	IGSF9	Q9P2J2	1179 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	DPP7	Q9UHL4	492 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	MYO10	Q9HD67	2058 aa		12.88	□□□□□ -0.35
CTNND1-238	ENST00000534647	CCDC194	A0A1B0GVG4	234 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	SRGAP2C	P0DJJ0	459 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	YWHAB	P31946	246 aa	Known RBP	12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	DSC1	Q08554	894 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	MXD4	Q14582	209 aa	Predicted RBP	12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	LETM2	Q2VYF4	491 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	KIAA0319	Q5VV43	1072 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	FERMT3	Q86UX7	667 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	COLGALT2	Q8IYK4	626 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	SMG8	Q8ND04	991 aa	Known RBP	12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	TMEM143	Q96AN5	459 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	CCDC51	Q96ER9	411 aa		12.87	□□□□□ -0.35
CTNND1-238	ENST00000534647	RPS6KC1	Q96S38	1066 aa		12.87	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms