RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RRAGBQ5VZM2 374 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 EEF1DP3Q658K8 133 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 GLB1LQ6UWU2 654 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 ABI1Q8IZP0 508 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 LRRC43Q8N309 656 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 KLHL23Q8NBE8 558 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 COLGALT1Q8NBJ5 622 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 GSTCDQ8NEC7 633 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 SPPL3Q8TCT6 385 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 DNAJC19Q96DA6 116 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 PANK2Q9BZ23 570 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 UBN1Q9NPG3 1134 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 TBC1D13Q9NVG8 400 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 LARSQ9P2J5 1176 aaKnown RBP14.3□□□□□ -0.12
VPS28-216ENST00000533806 PRRC2BQ5JSZ5 2229 aaKnown RBP14.3□□□□□ -0.12
VPS28-216ENST00000533806 FNDC1Q4ZHG4 1894 aaPredicted RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 MYMKA6NI61 221 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 ABLIM1O14639 778 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 N4BP3O15049 544 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 GTPBP6O43824 516 aaPredicted RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 B4GALT3O60512 393 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 ITGA4P13612 1032 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 LAG3P18627 525 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 PROZP22891 400 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 TXLNAP40222 546 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 DHX8Q14562 1220 aaKnown RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 CCDC73Q6ZRK6 1079 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 RASSF8Q8NHQ8 419 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 ACO2Q99798 780 aaKnown RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 MRPL9Q9BYD2 267 aaKnown RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 LMAN2LQ9H0V9 348 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 NXF3Q9H4D5 531 aaKnown RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 RSAD1Q9HA92 442 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 ALG13Q9NP73 1137 aaKnown RBP14.29□□□□□ -0.12
VPS28-216ENST00000533806 TNFSF13BQ9Y275 285 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 PHLPP2Q6ZVD8 1323 aa14.29□□□□□ -0.12
VPS28-216ENST00000533806 ARL5CA6NH57 179 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 NPTXRO95502 500 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 COL4A4P53420 1690 aaPredicted RBP14.28□□□□□ -0.12
VPS28-216ENST00000533806 SMTNP53814 917 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 PLCB3Q01970 1234 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 COL19A1Q14993 1142 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 CSPP1Q1MSJ5 1256 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 RALGAPA2Q2PPJ7 1873 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 ATF7IP2Q5U623 682 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 RESP18Q5W5W9 173 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 KCNT2Q6UVM3 1135 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 SV2BQ7L1I2 683 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 ZNF280BQ86YH2 543 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 LEO1Q8WVC0 666 aaPredicted RBP14.28□□□□□ -0.12
VPS28-216ENST00000533806 DDX12PQ92771 950 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 NRDE2Q9H7Z3 1164 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 PARVGQ9HBI0 331 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 AAASQ9NRG9 546 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 KBTBD4Q9NVX7 518 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 MIOSQ9NXC5 875 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 ZMYM2Q9UBW7 1377 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 MYH15Q9Y2K3 1946 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 GIT1Q9Y2X7 761 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 PCDHB12Q9Y5F1 795 aa14.28□□□□□ -0.12
VPS28-216ENST00000533806 FGF18O76093 207 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 DDHD2O94830 711 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 SCP2P22307 547 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 AKAP5P24588 427 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 PBX3P40426 434 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 STAT6P42226 847 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 ME1P48163 572 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 BCAR1P56945 870 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 DSC1Q08554 894 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 CCDC85BQ15834 202 aaPredicted RBP14.27□□□□□ -0.13
VPS28-216ENST00000533806 PTPROQ16827 1216 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 HAUS6Q7Z4H7 955 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 SLC39A11Q8N1S5 342 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 PDILTQ8N807 584 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 ZFP42Q96MM3 310 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 ZNF558Q96NG5 402 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 TARS2Q9BW92 718 aaKnown RBP14.27□□□□□ -0.13
VPS28-216ENST00000533806 STRA6Q9BX79 667 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 MRPL4Q9BYD3 311 aaKnown RBP14.27□□□□□ -0.13
VPS28-216ENST00000533806 TRIM6Q9C030 488 aaPredicted RBP14.27□□□□□ -0.13
VPS28-216ENST00000533806 ST6GALNAC4Q9H4F1 302 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 KANSL3Q9P2N6 904 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 LZTS1Q9Y250 596 aa14.27□□□□□ -0.13
VPS28-216ENST00000533806 FRMD3A2A2Y4 597 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 TRAK2O60296 914 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 GALTP07902 379 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 LIG1P18858 919 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 KRT85P78386 507 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 GTF2BQ00403 316 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 UBE3AQ05086 875 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 CNNM4Q6P4Q7 775 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 ZPBP2Q6X784 338 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 DYMQ7RTS9 669 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 MYCT1Q8N699 235 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 POF1BQ8WVV4 589 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 GAD1Q99259 594 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 CDT1Q9H211 546 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 CUEDC2Q9H467 287 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 PRDM6Q9NQX0 595 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 SPG21Q9NZD8 308 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms