RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MAP2K2P36507 400 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 BYSLQ13895 437 aaKnown RBP20.75■□□□□ 0.91
VPS28-213ENST00000530983 MIER3Q7Z3K6 550 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 HOOK3Q86VS8 718 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 MDM1Q8TC05 714 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 EPS8L1Q8TE68 723 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 TATDN2Q93075 761 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 VTI1AQ96AJ9 217 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 ACCSQ96QU6 501 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 CNOT10Q9H9A5 744 aaKnown RBP20.75■□□□□ 0.91
VPS28-213ENST00000530983 NOCTQ9UK39 431 aaKnown RBP20.75■□□□□ 0.91
VPS28-213ENST00000530983 PCDHA3Q9Y5H8 950 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 ZHX2Q9Y6X8 837 aa20.75■□□□□ 0.91
VPS28-213ENST00000530983 ZNFX1Q9P2E3 1918 aaKnown RBP20.74■□□□□ 0.91
VPS28-213ENST00000530983 SGPL1O95470 568 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 MAPTP10636 758 aaKnown RBP20.74■□□□□ 0.91
VPS28-213ENST00000530983 HSPA6P17066 643 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 RPL21P46778 160 aaKnown RBP20.74■□□□□ 0.91
VPS28-213ENST00000530983 GRIPAP1Q4V328 841 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 NOP9Q86U38 636 aaKnown RBP20.74■□□□□ 0.91
VPS28-213ENST00000530983 CCDC13Q8IYE1 715 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 SEC16BQ96JE7 1060 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 CABS1Q96KC9 395 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 RPS6KC1Q96S38 1066 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 KCNH7Q9NS40 1196 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 HSPBP1Q9NZL4 362 aa20.74■□□□□ 0.91
VPS28-213ENST00000530983 ATMINO43313 823 aaPredicted RBP20.73■□□□□ 0.91
VPS28-213ENST00000530983 P4HBP07237 508 aaKnown RBP20.73■□□□□ 0.91
VPS28-213ENST00000530983 ALCAMQ13740 583 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 MESDQ14696 234 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 UBAP2Q5T6F2 1119 aaKnown RBP20.73■□□□□ 0.91
VPS28-213ENST00000530983 MSL1Q68DK7 614 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 XXYLT1Q8NBI6 393 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 CD101Q93033 1021 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 CLRN2A0PK11 232 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 YDJCA8MPS7 323 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 PLSCR1O15162 318 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 DHX15O43143 795 aaKnown RBP20.73■□□□□ 0.91
VPS28-213ENST00000530983 MTA2O94776 668 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 RARRES1P49788 294 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 DRP2Q13474 957 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 DENND2CQ68D51 928 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 PGM2Q96G03 612 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 OSBPL7Q9BZF2 842 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 TMEM117Q9H0C3 514 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 ACP6Q9NPH0 428 aa20.73■□□□□ 0.91
VPS28-213ENST00000530983 PHF20L1A8MW92 1017 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 PLA2G6O60733 806 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 PLS3P13797 630 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 HSD17B4P51659 736 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 PLCB4Q15147 1175 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 SPRED3Q2MJR0 410 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 ERMARDQ5T6L9 678 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 FAM71AQ8IYT1 594 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 IL31RAQ8NI17 732 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.72■□□□□ 0.911e-6■■■■■ 37.9
VPS28-213ENST00000530983 COL20A1Q9P218 1284 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 TCRBV7S2A1N4TA0A589 114 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 PYGMP11217 842 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 DRD4P21917 467 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 MXI1P50539 228 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 SLC29A2Q14542 456 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 CCDC137Q6PK04 289 aaKnown RBP20.72■□□□□ 0.91
VPS28-213ENST00000530983 CCDC121Q6ZUS5 278 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 ARMC9Q7Z3E5 817 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 CPNE8Q86YQ8 564 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 CENPTQ96BT3 561 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 KREMEN1Q96MU8 473 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 XPO6Q96QU8 1125 aaKnown RBP20.72■□□□□ 0.91
VPS28-213ENST00000530983 SH2D3AQ9BRG2 576 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 DEFB129Q9H1M3 183 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 DBR1Q9UK59 544 aaKnown RBP20.72■□□□□ 0.91
VPS28-213ENST00000530983 TRPC6Q9Y210 931 aa20.72■□□□□ 0.91
VPS28-213ENST00000530983 PODXLO00592 558 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 GGPS1O95749 300 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 GZMAP12544 262 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 ALAS1P13196 640 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 SEL1L2Q5TEA6 688 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 STYK1Q6J9G0 422 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 HAUS6Q7Z4H7 955 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 FAM160B2Q86V87 743 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 SLC47A2Q86VL8 602 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 AGBL1Q96MI9 1066 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 WNT8AQ9H1J5 351 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 ADAM7Q9H2U9 754 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 SEMA4AQ9H3S1 761 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 SPDYE2BA6NHP3 402 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 H0YIN7 160 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 CYP26A1O43174 497 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 ADRB2P07550 413 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 SPDYE6P0CI01 402 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 GTF2BQ00403 316 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 CACNA2D3Q8IZS8 1091 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 BTBD6Q96KE9 485 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 GLIS2Q9BZE0 524 aaPredicted RBP20.71■□□□□ 0.91
VPS28-213ENST00000530983 FAM129AQ9BZQ8 928 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 TMOD2Q9NZR1 351 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 USP20Q9Y2K6 914 aa20.71■□□□□ 0.91
VPS28-213ENST00000530983 CCDC169A6NNP5 214 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 MAPK13O15264 365 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms