RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PSMD2Q13200 908 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 NAA30Q147X3 362 aaPredicted RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 TARBP2Q15633 366 aaKnown RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 UGCGQ16739 394 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 XKR9Q5GH70 373 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 ZNF484Q5JVG2 852 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 COX20Q5RI15 118 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 UTP14CQ5TAP6 766 aaKnown RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 CCSAPQ6IQ19 270 aaPredicted RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 RINT1Q6NUQ1 792 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 C1orf186Q6ZWK4 172 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 RNF180Q86T96 592 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 CKAP2LQ8IYA6 745 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 PGBD3Q8N328 593 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 ATP8B4Q8TF62 1192 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 LRRC15Q8TF66 581 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 NANOS1Q8WY41 292 aaKnown RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 JPH2Q9BR39 696 aaPredicted RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 NTPCRQ9BSD7 190 aaKnown RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 KATNAL1Q9BW62 490 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 SEZ6LQ9BYH1 1024 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 TRIM9Q9C026 710 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 BHMT2Q9H2M3 363 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 RNPEPQ9H4A4 650 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 XPNPEP3Q9NQH7 507 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 CYP26B1Q9NR63 512 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 TUBE1Q9UJT0 475 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 LRFN2Q9ULH4 789 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 PCDHA5Q9Y5H7 936 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 GPC6Q9Y625 555 aaPredicted RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 IGSF9BQ9UPX0 1349 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 A0A087WWV3 80 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 ARHGEF35A5YM69 484 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 MAGEB2O15479 319 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 MAFO75444 373 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 C6orf222P0C671 652 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 COL6A1P12109 1028 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 PURAQ00577 322 aaKnown RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 CDC42EP1Q00587 391 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 UBAP2LQ14157 1087 aaKnown RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 GIT2Q14161 759 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 KCNB1Q14721 858 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 LBRQ14739 615 aaKnown RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 PLCB4Q15147 1175 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 KCNA10Q16322 511 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 CT47A1Q5JQC4 288 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 SASS6Q6UVJ0 657 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 CCDC65Q8IXS2 484 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 C7orf61Q8IZ16 206 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 TRIML1Q8N9V2 468 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 KAT2BQ92831 832 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 SMARCE1Q969G3 411 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 CCDC47Q96A33 483 aaKnown RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 DNAJC19Q96DA6 116 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 ZNF837Q96EG3 531 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 CEP170P1Q96L14 293 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 CEP89Q96ST8 783 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 MTG1Q9BT17 334 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 SENP6Q9GZR1 1112 aaPredicted RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 NUCKS1Q9H1E3 243 aaKnown RBP8.19□□□□□ -1.1
CD44-228ENST00000528455 C17orf75Q9HAS0 396 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 RMND1Q9NWS8 449 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 ODF2LQ9ULJ1 636 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 NRCAMQ92823 1304 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 COL1A2P08123 1366 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 MYH11P35749 1972 aa8.19□□□□□ -1.1
CD44-228ENST00000528455 IGKV6-21A0A0C4DH24 114 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 KBTBD13C9JR72 458 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 DNM1LO00429 736 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 ASAP2O43150 1006 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 GAS2O43903 313 aaKnown RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 RHOBTB3O94955 611 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 PGK1P00558 417 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 F2P00734 622 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 RPN1P04843 607 aaKnown RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 SSBP05455 408 aaKnown RBP eCLIP8.18□□□□□ -1.1
CD44-228ENST00000528455 MYL3P08590 195 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 GNAT1P11488 350 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 INSRRP14616 1297 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 SCP2P22307 547 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 NPEPPSP55786 919 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 RTP1P59025 263 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 BEX3Q00994 111 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 PRKCEQ02156 737 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 PTPN11Q06124 597 aaPredicted RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 PNOCQ13519 176 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 CUL4BQ13620 913 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 DHX8Q14562 1220 aaKnown RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 ZSCAN23Q3MJ62 389 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 C16orf46Q6P387 395 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 UNC13DQ70J99 1090 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 NLRP8Q86W28 1048 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 GPBP1Q86WP2 473 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 VWA5B2Q8N398 1253 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 SLC17A8Q8NDX2 589 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 MCPH1Q8NEM0 835 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 STAMQ92783 540 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 DHX33Q9H6R0 707 aaKnown RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 PANK4Q9NVE7 773 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 SEL1LQ9UBV2 794 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms