RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 EXOC8Q8IYI6 725 aa22.48■■□□□ 1.19
VPS28-209ENST00000528142 TXLNBQ8N3L3 684 aa22.48■■□□□ 1.19
VPS28-209ENST00000528142 PRPF31Q8WWY3 499 aaKnown RBP22.48■■□□□ 1.19
VPS28-209ENST00000528142 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.48■■□□□ 1.19
VPS28-209ENST00000528142 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.48■■□□□ 1.19
VPS28-209ENST00000528142 V9GYY5 206 aaPredicted RBP22.48■■□□□ 1.19
VPS28-209ENST00000528142 LRRN2O75325 713 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 TADA3O75528 432 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 PNMA6AP0CW24 399 aaPredicted RBP22.47■■□□□ 1.19
VPS28-209ENST00000528142 MAPK4P31152 587 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 RBM10P98175 930 aaKnown RBP22.47■■□□□ 1.19
VPS28-209ENST00000528142 PLEKHH3Q7Z736 793 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 MNS1Q8NEH6 495 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 CCDC127Q96BQ5 260 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 NENFQ9UMX5 172 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 COQ4Q9Y3A0 265 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 MCM3APO60318 1980 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 PLXNB2O15031 1838 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 KIAA0391O15091 583 aaKnown RBP22.47■■□□□ 1.19
VPS28-209ENST00000528142 EXTL3O43909 919 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 GFPT2O94808 682 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 GH1P01241 217 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 GTF2H1P32780 548 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 GJC2Q5T442 439 aaPredicted RBP22.47■■□□□ 1.19
VPS28-209ENST00000528142 TCP11Q8WWU5 503 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 EMID1Q96A84 441 aaPredicted RBP22.47■■□□□ 1.19
VPS28-209ENST00000528142 MAML3Q96JK9 1138 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 FAM213AQ9BRX8 229 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 KIAA1586Q9HCI6 787 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 TMEM8AQ9HCN3 771 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 SALL4Q9UJQ4 1053 aa22.47■■□□□ 1.19
VPS28-209ENST00000528142 TMEM88BA6NKF7 163 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 HBP1O60381 514 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 EVI5O60447 810 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 EDN1P05305 212 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 PAPD7Q5XG87 772 aaKnown RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 KRT39Q6A163 491 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 DPP9Q86TI2 863 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 ZNF784Q8NCA9 323 aaPredicted RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 OLIG1Q8TAK6 271 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 PSPC1Q8WXF1 523 aaKnown RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 POP1Q99575 1024 aaKnown RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 HAPLN2Q9GZV7 340 aa22.46■■□□□ 1.19
VPS28-209ENST00000528142 LUC7LQ9NQ29 371 aaKnown RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 ABT1Q9ULW3 272 aaKnown RBP22.46■■□□□ 1.19
VPS28-209ENST00000528142 ZNF233A6NK53 670 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 EFCAB8A8MWE9 144 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 CDCA2Q69YH5 1023 aaPredicted RBP22.45■■□□□ 1.19
VPS28-209ENST00000528142 SLFN12LQ6IEE8 588 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 ARHGEF19Q8IW93 802 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 TARS2Q9BW92 718 aaKnown RBP22.45■■□□□ 1.19
VPS28-209ENST00000528142 SUGCTQ9HAC7 445 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 CAPN6Q9Y6Q1 641 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 ADGRA2Q96PE1 1338 aa22.45■■□□□ 1.19
VPS28-209ENST00000528142 ATP1A1P05023 1023 aaKnown RBP22.45■■□□□ 1.18
VPS28-209ENST00000528142 ADCYAP1R1P41586 468 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 MAP2K1Q02750 393 aaPredicted RBP22.45■■□□□ 1.18
VPS28-209ENST00000528142 LAMTOR4Q0VGL1 99 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 MXD4Q14582 209 aaPredicted RBP22.45■■□□□ 1.18
VPS28-209ENST00000528142 ELF2Q15723 593 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 ERCC6LQ2NKX8 1250 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 C10orf76Q5T2E6 689 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 TRAPPC11Q7Z392 1133 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 USP37Q86T82 979 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 FMNL3Q8IVF7 1028 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 RNF10Q8N5U6 811 aaKnown RBP22.45■■□□□ 1.18
VPS28-209ENST00000528142 TRIM58Q8NG06 486 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 PPTC7Q8NI37 304 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 SEMA4DQ92854 862 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 VTI1AQ96AJ9 217 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 SYT11Q9BT88 431 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 CCDC113Q9H0I3 377 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 RNPEPQ9H4A4 650 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 ERAP1Q9NZ08 941 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 NAGPAQ9UK23 515 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 TRPC6Q9Y210 931 aa22.45■■□□□ 1.18
VPS28-209ENST00000528142 ANO9A1A5B4 782 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 MANSC4A6NHS7 340 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 SLC15A5A6NIM6 579 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 ENC1O14682 589 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 TACC1O75410 805 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 MOCS3O95396 460 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 LGALS2P05162 132 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 EFNA5P52803 228 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 CLDN10P78369 228 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 NAB2Q15742 525 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 CRELD2Q6UXH1 353 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 LRRC71Q8N4P6 559 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 NPLOC4Q8TAT6 608 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 TRAPPC12Q8WVT3 735 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 ZBTB45Q96K62 511 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 JPH2Q9BR39 696 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 UBE2TQ9NPD8 197 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 TOPORSQ9NS56 1045 aaPredicted RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 AGO2Q9UKV8 859 aaKnown RBP22.44■■□□□ 1.18
VPS28-209ENST00000528142 SIP14410 1827 aa22.44■■□□□ 1.18
VPS28-209ENST00000528142 A0A0B4J269 797 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 FOXN3O00409 490 aaPredicted RBP22.43■■□□□ 1.18
VPS28-209ENST00000528142 DDX3XO00571 662 aaKnown RBP eCLIP22.43■■□□□ 1.186e-7■■□□□ 12.4
VPS28-209ENST00000528142 PSMD6Q15008 389 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms