RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ADH1AP07327 375 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 GCFC2P16383 781 aaKnown RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 SFPQP23246 707 aaKnown RBP eCLIP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 RAB27AP51159 221 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ATXN1P54253 815 aaKnown RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 LMNB2Q03252 620 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 TARBP2Q15633 366 aaKnown RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ST3GAL2Q16842 350 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 NEK8Q86SG6 692 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 PJA1Q8NG27 643 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 FEZF2Q8TBJ5 459 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 URGCPQ8TCY9 931 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 BCL7CQ8WUZ0 217 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ATRIPQ8WXE1 791 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ZNF668Q96K58 619 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 FAM193BQ96PV7 902 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 MAN1C1Q9NR34 630 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ORC3Q9UBD5 711 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 DDX25Q9UHL0 483 aaKnown RBP11.78□□□□□ -0.52
CPSF1-203ENST00000527916 KCNJ14Q9UNX9 436 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 DOCK8Q8NF50 2099 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ZFHX4Q86UP3 3567 aa11.78□□□□□ -0.52
CPSF1-203ENST00000527916 ATRXP46100 2492 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 CCDC194A0A1B0GVG4 234 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 TBX3O15119 743 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 INPPL1O15357 1258 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 LAMTOR5O43504 91 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 GLUD1P00367 558 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 ALDH2P05091 517 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 URODP06132 367 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 FDPSP14324 419 aaKnown RBP11.77□□□□□ -0.53
CPSF1-203ENST00000527916 FGFR4P22455 802 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 SLC11A1P49279 550 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 NEK4P51957 841 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 PRKCEQ02156 737 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 ME3Q16798 604 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 INF2Q27J81 1249 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 XKR3Q5GH77 459 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 MIER3Q7Z3K6 550 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 SMG7Q92540 1137 aaKnown RBP11.77□□□□□ -0.53
CPSF1-203ENST00000527916 LPPQ93052 612 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 GTF3C6Q969F1 213 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 PGBD4Q96DM1 585 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 MYADMQ96S97 322 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 VN1R3Q9BXE9 311 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 BCO2Q9BYV7 579 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 INO80BQ9C086 356 aaPredicted RBP11.77□□□□□ -0.53
CPSF1-203ENST00000527916 PIDD1Q9HB75 910 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 KCNMB3Q9NPA1 279 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 SLC2A4RGQ9NR83 387 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 SPATA6Q9NWH7 488 aaPredicted RBP11.77□□□□□ -0.53
CPSF1-203ENST00000527916 DNAJB4Q9UDY4 337 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 FBXO4Q9UKT5 387 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 PCDHGA2Q9Y5H1 932 aa11.77□□□□□ -0.53
CPSF1-203ENST00000527916 USP24Q9UPU5 2620 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 C2CD2LO14523 706 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 LILRB3O75022 631 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 ZNF623O75123 536 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 OFD1O75665 1012 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 STBD1O95210 358 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 DNM2P50570 870 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 STARD6P59095 220 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 PPP2R5CQ13362 524 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 UGCGQ16739 394 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 LONRF3Q496Y0 759 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 HDAC7Q8WUI4 952 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 RPS6KC1Q96S38 1066 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 CEP89Q96ST8 783 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 TMEM175Q9BSA9 504 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 RTKNQ9BST9 563 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 FOXQ1Q9C009 403 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 FAM105AQ9NUU6 356 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 KANSL3Q9P2N6 904 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 PIN4Q9Y237 131 aaKnown RBP11.76□□□□□ -0.53
CPSF1-203ENST00000527916 FAN1Q9Y2M0 1017 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 ZFP37Q9Y6Q3 630 aaPredicted RBP11.76□□□□□ -0.53
CPSF1-203ENST00000527916 BAHCC1Q9P281 2608 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 MIA3Q5JRA6 1907 aa11.76□□□□□ -0.53
CPSF1-203ENST00000527916 CNOT1A5YKK6 2376 aaKnown RBP11.75□□□□□ -0.53
CPSF1-203ENST00000527916 IGKV6-21A0A0C4DH24 114 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 CHMP2AO43633 222 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 SLC37A4O43826 429 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 DKC1O60832 514 aaKnown RBP eCLIP11.75□□□□□ -0.53
CPSF1-203ENST00000527916 CSDE1O75534 798 aaKnown RBP11.75□□□□□ -0.53
CPSF1-203ENST00000527916 SEC24BO95487 1268 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 SOD2P04179 222 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 LAMP2P13473 410 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 GLULP15104 373 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 MAGEA9P43362 315 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 PSMC5P62195 406 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 ZNF280BQ86YH2 543 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 EXOC8Q8IYI6 725 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 NECAB1Q8N987 351 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 OXER1Q8TDS5 423 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 TNFRSF25Q93038 417 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 GJA10Q969M2 543 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 PLEKHA4Q9H4M7 779 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 BRMS1Q9HCU9 246 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 GJB4Q9NTQ9 266 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms