RNA–Protein interactions for RNA: ENST00000511281.1

HMGB1P47-201, Transcript of high mobility group box 1 pseudogene 47, humanhuman

BASIC

Gene HMGB1P47, Length 589 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P47-201ENST00000511281 CCDC138Q96M89 665 aa6.77□□□□□ -1.33
HMGB1P47-201ENST00000511281 TACO1Q9BSH4 297 aaKnown RBP6.77□□□□□ -1.33
HMGB1P47-201ENST00000511281 ATP6V0A4Q9HBG4 840 aa6.77□□□□□ -1.33
HMGB1P47-201ENST00000511281 TRMT13Q9NUP7 481 aaKnown RBP6.77□□□□□ -1.33
HMGB1P47-201ENST00000511281 N4BP3O15049 544 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 FSBPO95073 299 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 MYL3P08590 195 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 IGFBP6P24592 240 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 CD69Q07108 199 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 RAPGEF1Q13905 1077 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 RTP5Q14D33 572 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 EIF4HQ15056 248 aaKnown RBP6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 DGKKQ5KSL6 1271 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 SAPCD2Q86UD0 394 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 OR2C3Q8N628 320 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 LINC00482Q8N8I6 264 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 C3orf20Q8ND61 904 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 ZNF526Q8TF50 670 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 SNX33Q8WV41 574 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 PPM1EQ8WY54 764 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 CYFIP2Q96F07 1278 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 UBA5Q9GZZ9 404 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 RTEL1Q9NZ71 1219 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 CALCOCO1Q9P1Z2 691 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 FNIP2Q9P278 1114 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 SAE1Q9UBE0 346 aaPredicted RBP6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 VWA7Q9Y334 891 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 PCDHA5Q9Y5H7 936 aa6.76□□□□□ -1.33
HMGB1P47-201ENST00000511281 A0A0G2JNJ9 132 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 PEX10O60683 326 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 KNG1P01042 644 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 GAAP10253 952 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 COL6A1P12109 1028 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 ATF2P15336 505 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 PIK3CBP42338 1070 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 SLC6A9P48067 706 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 RAB39AQ14964 217 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 NOMO1Q15155 1222 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 TAS1R1Q7RTX1 841 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 ABI1Q8IZP0 508 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 STPG3Q8N7X2 389 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 WDR92Q96MX6 357 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 CLIC6Q96NY7 704 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 GORASP1Q9BQQ3 440 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 HERPUD2Q9BSE4 406 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 MANSC1Q9H8J5 431 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 PCMTD2Q9NV79 361 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 Q9UFV3 132 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 PADI4Q9UM07 663 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 SIK3Q9Y2K2 1263 aa6.75□□□□□ -1.33
HMGB1P47-201ENST00000511281 PHGDHO43175 533 aaKnown RBP6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 PAPLNO95428 1278 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 GLRBP48167 497 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 PRIM2P49643 509 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 WNT3AP56704 352 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 CHAF1AQ13111 956 aaPredicted RBP6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 STK3Q13188 491 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 FGL2Q14314 439 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 C1orf228Q6PIY5 440 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 Q6ZVL8 140 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 TTLL6Q8N841 843 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 ACRBPQ8NEB7 543 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 SMARCC2Q8TAQ2 1214 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 TBCBQ99426 244 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 LRRC27Q9C0I9 530 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 BCO1Q9HAY6 547 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 PCDHA13Q9Y5I0 950 aa6.74□□□□□ -1.33
HMGB1P47-201ENST00000511281 CCDC189A1A4V9 331 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 CFAP69A5D8W1 941 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 ISM1B1AKI9 464 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 MYO1FO00160 1098 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 AKR1B10O60218 316 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 PPFIA4O75335 1185 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 CYP7B1O75881 506 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 FTH1P19P0C7X4 201 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 ECHS1P30084 290 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 TRAPPC10P48553 1259 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 SESN2P58004 480 aaPredicted RBP6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 TARDBPQ13148 414 aaKnown RBP eCLIP6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 WDR72Q3MJ13 1102 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 TRIM68Q6AZZ1 485 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 LDHDQ86WU2 507 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 FAM129CQ86XR2 697 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 KYQ8NBH2 561 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 PIK3C3Q8NEB9 887 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 ATXN2LQ8WWM7 1075 aaKnown RBP6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 MTFMTQ96DP5 389 aaKnown RBP6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 C11orf84Q9BUA3 381 aaPredicted RBP6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 LMBRD1Q9NUN5 540 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 TPCN1Q9ULQ1 816 aa6.73□□□□□ -1.33
HMGB1P47-201ENST00000511281 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 H0Y858 1186 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 TYRP14679 529 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 PFKLP17858 780 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 MC3RP41968 323 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 ETV4P43268 484 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 ATP8B2P98198 1209 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 TLE1Q04724 770 aa6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 TOP3AQ13472 1001 aaPredicted RBP6.72□□□□□ -1.33
HMGB1P47-201ENST00000511281 LRP8Q14114 963 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms