RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 A0A1B0GUA9 196 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 LOC101059915A0A1B0GWI6 518 aaPredicted RBP32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 N4BP3O15049 544 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 LIG4P49917 911 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 WDR5P61964 334 aaKnown RBP32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 ISM2Q6H9L7 571 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 ZPBP2Q6X784 338 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 FAM43BQ6ZT52 329 aaPredicted RBP32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 HERVK_113Q902F9 699 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 CXXC1Q9P0U4 656 aaPredicted RBP32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 TMEM63CQ9P1W3 806 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 ANKFY1Q9P2R3 1169 aa32.48■■■□□ 2.79
LIMCH1-211ENST00000509638 PIGRP01833 764 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 BMT2Q1RMZ1 405 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 EEF1DP3Q658K8 133 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 CAVIN1Q6NZI2 390 aaKnown RBP32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 SLC27A1Q6PCB7 646 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 EXOC7Q9UPT5 735 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 TNFSF13BQ9Y275 285 aa32.47■■■□□ 2.79
LIMCH1-211ENST00000509638 ENPP3O14638 875 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 IBSPP21815 317 aaPredicted RBP32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 HOXD13P35453 343 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 KCNJ6P48051 423 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 ZNF658Q5TYW1 1059 aaPredicted RBP32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 LIN28BQ6ZN17 250 aaKnown RBP eCLIP32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 NELFCDQ8IXH7 590 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 SYCP3Q8IZU3 236 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 ZNF507Q8TCN5 953 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 EIF2AQ9BY44 585 aaKnown RBP32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 MTIF3Q9H2K0 278 aaKnown RBP32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 C1orf112Q9NSG2 853 aa32.46■■■□□ 2.79
LIMCH1-211ENST00000509638 ZNF568Q3ZCX4 644 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 UBXN11Q5T124 520 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 SLC24A5Q71RS6 500 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 MYOCDQ8IZQ8 938 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 RNPC3Q96LT9 517 aaKnown RBP32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 ADPGKQ9BRR6 497 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 TMEM206Q9H813 350 aa32.45■■■□□ 2.79
LIMCH1-211ENST00000509638 TISP43B9A030 160 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 C9IYK1 514 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 TOM1L1O75674 476 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 DEFB103AP81534 67 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 MORC3Q14149 939 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 SHHQ15465 462 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 SLC39A4Q6P5W5 647 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 CHRDL2Q6WN34 429 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 SYAP1Q96A49 352 aaPredicted RBP32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 TRAIPQ9BWF2 469 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 FAM105AQ9NUU6 356 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 MAPK8IP1Q9UQF2 711 aa32.45■■■□□ 2.78
LIMCH1-211ENST00000509638 NPTXRO95502 500 aa32.44■■■□□ 2.78
LIMCH1-211ENST00000509638 PROZP22891 400 aa32.44■■■□□ 2.78
LIMCH1-211ENST00000509638 MPZL3Q6UWV2 235 aa32.44■■■□□ 2.78
LIMCH1-211ENST00000509638 TRIM6Q9C030 488 aaPredicted RBP32.44■■■□□ 2.78
LIMCH1-211ENST00000509638 ABLIM1O14639 778 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 AMHP03971 560 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 BMP6P22004 513 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 BMP8BP34820 402 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 RAB27AP51159 221 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 RBM43Q6ZSC3 357 aaKnown RBP32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 TRIML1Q8N9V2 468 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 ZBTB45Q96K62 511 aaPredicted RBP32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 TCHPQ9BT92 498 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 GTPBP4Q9BZE4 634 aaKnown RBP32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 CDT1Q9H211 546 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 PTPRHQ9HD43 1115 aa32.43■■■□□ 2.78
LIMCH1-211ENST00000509638 DCAF4L1Q3SXM0 396 aa32.42■■■□□ 2.78
LIMCH1-211ENST00000509638 RASIP1Q5U651 963 aa32.42■■■□□ 2.78
LIMCH1-211ENST00000509638 ZBTB33Q86T24 672 aa32.42■■■□□ 2.78
LIMCH1-211ENST00000509638 PCDHB2Q9Y5E7 798 aa32.42■■■□□ 2.78
LIMCH1-211ENST00000509638 A0A0U1RQF3 1178 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 ANKRD63C9JTQ0 380 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 HARSP12081 509 aaKnown RBP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 MATR3P43243 847 aaKnown RBP eCLIP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 NOLC1Q14978 699 aaKnown RBP eCLIP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 KNOP1Q1ED39 458 aaKnown RBP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 SKOR2Q2VWA4 1001 aaPredicted RBP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 GUF1Q8N442 669 aaKnown RBP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 GBP3Q9H0R5 595 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 NXF3Q9H4D5 531 aaKnown RBP32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 SLC4A7Q9Y6M7 1214 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 CLDN3O15551 220 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 KIF20AO95235 890 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 ECHDC2Q86YB7 292 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 IPPQ9Y573 584 aa32.41■■■□□ 2.78
LIMCH1-211ENST00000509638 ATF7P17544 494 aaPredicted RBP32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 PRCPP42785 496 aa32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 MCL1Q07820 350 aa32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 APBB1IPQ7Z5R6 666 aaPredicted RBP32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 TMCO2Q7Z6W1 182 aaPredicted RBP32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 RNF169Q8NCN4 708 aa32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 HAPLN2Q9GZV7 340 aa32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 PRO3102Q9H379 93 aa32.4■■■□□ 2.78
LIMCH1-211ENST00000509638 GBF1Q92538 1859 aa32.39■■■□□ 2.78
LIMCH1-211ENST00000509638 SKIP12755 728 aa32.39■■■□□ 2.78
LIMCH1-211ENST00000509638 COBLL1Q53SF7 1204 aa32.39■■■□□ 2.78
LIMCH1-211ENST00000509638 HES2Q9Y543 173 aa32.39■■■□□ 2.78
LIMCH1-211ENST00000509638 CITO14578 2027 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 TGFB1I1O43294 461 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 MCF2P10911 925 aa32.38■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms