RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 FAM193BQ96PV7 902 aaPredicted RBP19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 NACC1Q96RE7 527 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 TFIP11Q9UBB9 837 aaKnown RBP19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 RCOR1Q9UKL0 485 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 CNTNAP2Q9UHC6 1331 aa19.94■□□□□ 0.78
SQSTM1-209ENST00000504627 DCXO43602 365 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 TSPAN1O60635 241 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 GPR37L1O60883 481 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 SPATA31C1P0DKV0 1188 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 ITGA4P13612 1032 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 CAPSQ13938 189 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 SF3A1Q15459 793 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 UBXN11Q5T124 520 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 AGMOQ6ZNB7 445 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 VPS52Q8N1B4 723 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 MRPL43Q8N983 215 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 LINC00301Q8NCQ3 95 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 VN1R2Q8NFZ6 395 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 CPB2Q96IY4 423 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 POLR3CQ9BUI4 534 aaPredicted RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 POLR3FQ9H1D9 316 aaPredicted RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 UBN1Q9NPG3 1134 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 LMBRD1Q9NUN5 540 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 KANSL3Q9P2N6 904 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 RAPGEFL1Q9UHV5 662 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 USP15Q9Y4E8 981 aaPredicted RBP19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 CLIC4Q9Y696 253 aa19.93■□□□□ 0.78
SQSTM1-209ENST00000504627 MED24O75448 989 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 CXCL14O95715 111 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 GALTP07902 379 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 GLRA2P23416 452 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 PTPAQ15257 358 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 ZNF280BQ86YH2 543 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 MCPH1Q8NEM0 835 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 CCDC51Q96ER9 411 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 IGSF21Q96ID5 467 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 TRIM6Q9C030 488 aaPredicted RBP19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 DNAJB4Q9UDY4 337 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 DBR1Q9UK59 544 aaKnown RBP19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 ARID2Q68CP9 1835 aa19.92■□□□□ 0.78
SQSTM1-209ENST00000504627 C5orf42Q9H799 3197 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 C2orf71A6NGG8 1288 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 LRRIQ4A6NIV6 560 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 PPP6R2O75170 966 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 PRPF40AO75400 957 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 POMCP01189 267 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 SLC11A1P49279 550 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 UBE2HP62256 183 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 CEBPZQ03701 1054 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 MBTD1Q05BQ5 628 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 SLC39A14Q15043 492 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 HAUS3Q68CZ6 603 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 ANKRD54Q6NXT1 300 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 POTEGQ6S5H5 508 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 TMEM184AQ6ZMB5 413 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 TMEM173Q86WV6 379 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 IFNLR1Q8IU57 520 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 EIF2AQ9BY44 585 aaKnown RBP19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 CSRNP2Q9H175 543 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 GPRC5CQ9NQ84 441 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 IPPQ9Y573 584 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 PCDHB6Q9Y5E3 794 aa19.91■□□□□ 0.78
SQSTM1-209ENST00000504627 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 ARHGEF35A5YM69 484 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 SPTLC2O15270 562 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 ALDH2P05091 517 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 RPA1P27694 616 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 NBR1Q14596 966 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 DDX53Q86TM3 631 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 HACE1Q8IYU2 909 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 SMG8Q8ND04 991 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 CASP10Q92851 521 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 APOL6Q9BWW8 343 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 APOL5Q9BWW9 433 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 NFKBIZQ9BYH8 718 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 ZBP1Q9H171 429 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 C11orf16Q9NQ32 467 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 FAN1Q9Y2M0 1017 aa19.9■□□□□ 0.78
SQSTM1-209ENST00000504627 DDHD2O94830 711 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 MBD3O95983 291 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 HOXB8P17481 243 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 ARF4P18085 180 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 AFF1P51825 1210 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 KCNC3Q14003 757 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 GIT2Q14161 759 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 RNF135Q8IUD6 432 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 ZBTB8OSQ8IWT0 167 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 AUTS2Q8WXX7 1259 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 RPGRIP1Q96KN7 1286 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 PHF7Q9BWX1 381 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 STK39Q9UEW8 545 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 LRWD1Q9UFC0 647 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 HCN4Q9Y3Q4 1203 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 HES2Q9Y543 173 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 HCFC2Q9Y5Z7 792 aa19.89■□□□□ 0.77
SQSTM1-209ENST00000504627 CLASP2O75122 1294 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-209ENST00000504627 CTSAP10619 480 aa19.88■□□□□ 0.77
SQSTM1-209ENST00000504627 CCT6AP40227 531 aaKnown RBP19.88■□□□□ 0.77
SQSTM1-209ENST00000504627 MLH1P40692 756 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms