RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 PHOX2BQ99453 314 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 HSD17B14Q9BPX1 270 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 EIF2AQ9BY44 585 aaKnown RBP24.59■■□□□ 1.53
HDDC3-203ENST00000494993 SFXN1Q9H9B4 322 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 PCDHA12Q9UN75 941 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 USTQ9Y2C2 406 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 IPPQ9Y573 584 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 LILRB3O75022 631 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 PDGFBP01127 241 aaPredicted RBP24.58■■□□□ 1.53
HDDC3-203ENST00000494993 CNPP09543 421 aaKnown RBP24.58■■□□□ 1.53
HDDC3-203ENST00000494993 KLRC2P26717 231 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 CLCN4P51793 760 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 POU5F1BQ06416 359 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 TFDP1Q14186 410 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 NOTUMQ6P988 496 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 TMC5Q6UXY8 1006 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 FEZF2Q8TBJ5 459 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 ANKEF1Q9NU02 776 aa24.58■■□□□ 1.53
HDDC3-203ENST00000494993 INO80B-WBP1J3KQ70 363 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 INPPL1O15357 1258 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 DGAT1O75907 488 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 SOD2P04179 222 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 CAPSQ13938 189 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 COLGALT2Q8IYK4 626 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 PLCD3Q8N3E9 789 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 NSUN7Q8NE18 718 aaKnown RBP24.57■■□□□ 1.52
HDDC3-203ENST00000494993 ASAP3Q8TDY4 903 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 CPB2Q96IY4 423 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 TTC12Q9H892 705 aaPredicted RBP24.57■■□□□ 1.52
HDDC3-203ENST00000494993 MRPL17Q9NRX2 175 aaKnown RBP24.57■■□□□ 1.52
HDDC3-203ENST00000494993 MARCH5Q9NX47 278 aa24.57■■□□□ 1.52
HDDC3-203ENST00000494993 SPDYE4A6NLX3 237 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 BTBD18B2RXH4 712 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 ASGR2P07307 311 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 MBTD1Q05BQ5 628 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 NCBP1Q09161 790 aaKnown RBP24.56■■□□□ 1.52
HDDC3-203ENST00000494993 GPR149Q86SP6 731 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 GAD1Q99259 594 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 HERC2P3Q9BVR0 1158 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 CSRNP2Q9H175 543 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 RNF39Q9H2S5 420 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 PRG3Q9Y2Y8 225 aaPredicted RBP24.56■■□□□ 1.52
HDDC3-203ENST00000494993 HES2Q9Y543 173 aa24.56■■□□□ 1.52
HDDC3-203ENST00000494993 ARL5CA6NH57 179 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 WNT7AO00755 349 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 NEMFO60524 1076 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 URODP06132 367 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 NEFLP07196 543 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 ARL2P36404 184 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 MLH1P40692 756 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 OR1G1P47890 313 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 RARRES1P49788 294 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 DSC1Q08554 894 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 AMHR2Q16671 573 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 DIS3L2Q8IYB7 885 aaKnown RBP24.55■■□□□ 1.52
HDDC3-203ENST00000494993 CCDC43Q96MW1 224 aaKnown RBP24.55■■□□□ 1.52
HDDC3-203ENST00000494993 SMOC2Q9H3U7 446 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 LIMD1Q9UGP4 676 aa24.55■■□□□ 1.52
HDDC3-203ENST00000494993 C2CD2LO14523 706 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 ARF4P18085 180 aaPredicted RBP24.54■■□□□ 1.52
HDDC3-203ENST00000494993 GLRA2P23416 452 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 TXKP42681 527 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 FOSBP53539 338 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 CCDC149Q6ZUS6 474 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 RNF168Q8IYW5 571 aaPredicted RBP24.54■■□□□ 1.52
HDDC3-203ENST00000494993 NFKBIZQ9BYH8 718 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 MIOSQ9NXC5 875 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 SSX2IPQ9Y2D8 614 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 DOCK8Q8NF50 2099 aa24.54■■□□□ 1.52
HDDC3-203ENST00000494993 JAK2O60674 1132 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 EFEMP2O95967 443 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 SCNN1GP51170 649 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 TAS1R1Q7RTX1 841 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 ACSF2Q96CM8 615 aaPredicted RBP24.53■■□□□ 1.52
HDDC3-203ENST00000494993 ZFP42Q96MM3 310 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 MTMR9Q96QG7 549 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 RPS6KC1Q96S38 1066 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 APOL6Q9BWW8 343 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 TRIM6Q9C030 488 aaPredicted RBP24.53■■□□□ 1.52
HDDC3-203ENST00000494993 NXF3Q9H4D5 531 aaKnown RBP24.53■■□□□ 1.52
HDDC3-203ENST00000494993 GIT1Q9Y2X7 761 aa24.53■■□□□ 1.52
HDDC3-203ENST00000494993 GLUD2P49448 558 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 NUBP1P53384 320 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 TRIM29Q14134 588 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 C15orf39Q6ZRI6 1047 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 HACE1Q8IYU2 909 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 PIGOQ8TEQ8 1089 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 POLR3FQ9H1D9 316 aaPredicted RBP24.52■■□□□ 1.52
HDDC3-203ENST00000494993 MAN1C1Q9NR34 630 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 USP34Q70CQ2 3546 aa24.52■■□□□ 1.52
HDDC3-203ENST00000494993 POTEMA6NI47 508 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 B4GALT5O43286 388 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 USO1O60763 962 aaKnown RBP24.51■■□□□ 1.51
HDDC3-203ENST00000494993 ADH1AP07327 375 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 XRCC6P12956 609 aaKnown RBP eCLIP24.51■■□□□ 1.51
HDDC3-203ENST00000494993 KIAA0319Q5VV43 1072 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 OTOP3Q7RTS5 596 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 IRF2BPLQ9H1B7 796 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 FAM86C1Q9NVL1 165 aa24.51■■□□□ 1.51
HDDC3-203ENST00000494993 A0A087WWV3 80 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms