RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 VIPAS39Q9H9C1 493 aa20.36■□□□□ 0.85
COL27A1-207ENST00000494090 SBK1Q52WX2 424 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 FASTKD5Q7L8L6 764 aaKnown RBP20.35■□□□□ 0.85
COL27A1-207ENST00000494090 RHOT1Q8IXI2 618 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 RNF25Q96BH1 459 aaPredicted RBP20.35■□□□□ 0.85
COL27A1-207ENST00000494090 TIPINQ9BVW5 301 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF212Q9UDV6 495 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 ANKRD65E5RJM6 399 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 GYG2O15488 501 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 MX2P20592 715 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 TRIM59Q8IWR1 403 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 IFT43Q96FT9 208 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 MMP19Q99542 508 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 PPARGC1AQ9UBK2 798 aaKnown RBP20.35■□□□□ 0.85
COL27A1-207ENST00000494090 POLR1AO95602 1720 aaPredicted RBP20.35■□□□□ 0.85
COL27A1-207ENST00000494090 FAM196BA6NMK8 535 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 DRP2Q13474 957 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 EPHA7Q15375 998 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 ITPRIPL1Q6GPH6 555 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 FRA10AC1Q70Z53 315 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 TUFT1Q9NNX1 390 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 E9PCH4 1651 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 DDX56Q9NY93 547 aaKnown RBP20.35■□□□□ 0.85
COL27A1-207ENST00000494090 FBXL5Q9UKA1 691 aa20.35■□□□□ 0.85
COL27A1-207ENST00000494090 MDM2Q00987 491 aaPredicted RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 TAP1Q03518 808 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SCN4BQ8IWT1 228 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF560Q96MR9 790 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 ZFP69BQ9UJL9 534 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SSU72P8A0A1W2PR75 194 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 CFLARO15519 480 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 BRAFP15056 766 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SMARCA1P28370 1054 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 GNA15P30679 374 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 DEUP1Q05D60 604 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 E2F4Q16254 413 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF746Q6NUN9 644 aaPredicted RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 G3BP2Q9UN86 482 aaKnown RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 INPP5FQ9Y2H2 1132 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 DPYSL4O14531 572 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 AKR1B1P15121 316 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 EFNA5P52803 228 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 FSCBQ5H9T9 825 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 ZNF526Q8TF50 670 aaPredicted RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 GABBR1Q9UBS5 961 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SLC26A4O43511 780 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 BNIP3LO60238 219 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 PYGBP11216 843 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 ARHGEF1Q92888 912 aaKnown RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 CHP1Q99653 195 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 APOBEC2Q9Y235 224 aaKnown RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 EMSYQ7Z589 1322 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SNX2O60749 519 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 CDC42EP1Q00587 391 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SPP2Q13103 211 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 AGPAT1Q99943 283 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 LRRC1Q9BTT6 524 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 MRPL40Q9NQ50 206 aaKnown RBP20.34■□□□□ 0.85
COL27A1-207ENST00000494090 INTUQ9ULD6 942 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 PTPRUQ92729 1446 aa20.34■□□□□ 0.85
COL27A1-207ENST00000494090 SLC18A3Q16572 532 aa20.33■□□□□ 0.85
COL27A1-207ENST00000494090 THOC1Q96FV9 657 aaKnown RBP20.33■□□□□ 0.85
COL27A1-207ENST00000494090 MMTAG2Q9BU76 263 aaKnown RBP20.33■□□□□ 0.85
COL27A1-207ENST00000494090 OLA1Q9NTK5 396 aaKnown RBP20.33■□□□□ 0.85
COL27A1-207ENST00000494090 AFF2P51816 1311 aa20.33■□□□□ 0.85
COL27A1-207ENST00000494090 KRT14P02533 472 aa20.33■□□□□ 0.85
COL27A1-207ENST00000494090 NRBF2Q96F24 287 aa20.33■□□□□ 0.85
COL27A1-207ENST00000494090 TMCC1O94876 653 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 CSF1RP07333 972 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 TRIM49P0CI25 452 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 TRIM49CP0CI26 452 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 GPD1LQ8N335 351 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 IQCA1LA6NCM1 817 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 FAM205CA6NFA0 338 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 SPAG7O75391 227 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 ZFXP17010 805 aaPredicted RBP20.33■□□□□ 0.84
COL27A1-207ENST00000494090 ANTXR2P58335 489 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 TMCO4Q5TGY1 634 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 KRT80Q6KB66 452 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 TRPV6Q9H1D0 765 aa20.33■□□□□ 0.84
COL27A1-207ENST00000494090 POLR3FQ9H1D9 316 aaPredicted RBP20.33■□□□□ 0.84
COL27A1-207ENST00000494090 FARP1Q9Y4F1 1045 aaPredicted RBP20.33■□□□□ 0.84
COL27A1-207ENST00000494090 SWSAP1Q6NVH7 229 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 CDKL3Q8IVW4 592 aaPredicted RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 ELOA2Q8IYF1 753 aaPredicted RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 IRX2Q9BZI1 471 aaPredicted RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 TTC7AQ9ULT0 858 aaPredicted RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 EFHC2Q5JST6 749 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 RNF168Q8IYW5 571 aaPredicted RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 RNPC3Q96LT9 517 aaKnown RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 DLC1Q96QB1 1528 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 TRPA1O75762 1119 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 TC2NQ8N9U0 490 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 TGS1Q96RS0 853 aaKnown RBP20.32■□□□□ 0.84
COL27A1-207ENST00000494090 KRT82Q9NSB4 513 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 M0QYV0 167 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 RTN2O75298 545 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 RHPN2Q8IUC4 686 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 LRRC37BQ96QE4 947 aa20.32■□□□□ 0.84
COL27A1-207ENST00000494090 GOLGA8MH3BSY2 632 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms