RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 PKD2L1Q9P0L9 805 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 CIDEBQ9UHD4 219 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 MYH7BA7E2Y1 1941 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 MYADML2A6NDP7 307 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 NDUFAB1O14561 156 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 DYNC1LI2O43237 492 aaPredicted RBP12.54□□□□□ -0.4
BRCA1-222ENST00000493919 MMP1P03956 469 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 PDGFRBP09619 1106 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 CBX3Q13185 183 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 PLCB4Q15147 1175 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 PTPROQ16827 1216 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 ADALQ6DHV7 355 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 RNF180Q86T96 592 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 LURAP1LQ8IV03 231 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 SLC15A3Q8IY34 581 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 ARRDC4Q8NCT1 418 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 OR6J1Q8NGC5 347 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 MRRFQ96E11 262 aaKnown RBP12.54□□□□□ -0.4
BRCA1-222ENST00000493919 INPP4AQ96PE3 977 aaPredicted RBP12.54□□□□□ -0.4
BRCA1-222ENST00000493919 TSC22D3Q99576 134 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 AP5M1Q9H0R1 490 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 FOXD4L1Q9NU39 408 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 IL20Q9NYY1 176 aa12.54□□□□□ -0.4
BRCA1-222ENST00000493919 GNEQ9Y223 722 aaKnown RBP12.54□□□□□ -0.4
BRCA1-222ENST00000493919 TNRC18O15417 2968 aaPredicted RBP12.54□□□□□ -0.4
BRCA1-222ENST00000493919 FIBPO43427 364 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 ADAMTS4O75173 837 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 CCDC166P0CW27 439 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 RBP3P10745 1247 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 CCT6AP40227 531 aaKnown RBP12.53□□□□□ -0.4
BRCA1-222ENST00000493919 BEX3Q00994 111 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 NR5A1Q13285 461 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 MTMR1Q13613 665 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 LRRC41Q15345 812 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 MAPRE1Q15691 268 aaKnown RBP12.53□□□□□ -0.4
BRCA1-222ENST00000493919 XRRA1Q6P2D8 792 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 PIK3AP1Q6ZUJ8 805 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 NLRX1Q86UT6 975 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 DIS3L2Q8IYB7 885 aaKnown RBP12.53□□□□□ -0.4
BRCA1-222ENST00000493919 TBCKQ8TEA7 893 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 MAML1Q92585 1016 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 PAWRQ96IZ0 340 aaKnown RBP12.53□□□□□ -0.4
BRCA1-222ENST00000493919 CTAGE1Q96RT6 745 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 DISC1Q9NRI5 854 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 DOCK5Q9H7D0 1870 aa12.53□□□□□ -0.4
BRCA1-222ENST00000493919 TTC34A8MYJ7 566 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 DNM1LO00429 736 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 NKRFO15226 690 aaKnown RBP eCLIP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 SMNDC1O75940 238 aaKnown RBP eCLIP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 TMCC1O94876 653 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 TUBB4AP04350 444 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 UBA1P22314 1058 aaKnown RBP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 LIG3P49916 1009 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 SP4Q02446 784 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 GNL2Q13823 731 aaKnown RBP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 NONOQ15233 471 aaKnown RBP eCLIP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 SAFBQ15424 915 aaKnown RBP eCLIP12.52□□□□□ -0.4
BRCA1-222ENST00000493919 CEP85LQ5SZL2 805 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 CCDC62Q6P9F0 684 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 KRT25Q7Z3Z0 450 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 ANKLE1Q8NAG6 615 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 CYP2W1Q8TAV3 490 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 PYCARDQ9ULZ3 195 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 ZNF148Q9UQR1 794 aa12.52□□□□□ -0.4
BRCA1-222ENST00000493919 GGPS1O95749 300 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 GH1P01241 217 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 HNRNPCP07910 306 aaKnown RBP eCLIP12.52□□□□□ -0.41
BRCA1-222ENST00000493919 ITGB5P18084 799 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 GJA9P57773 515 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 CUL4AQ13619 759 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 FSCN1Q16658 493 aaKnown RBP12.52□□□□□ -0.41
BRCA1-222ENST00000493919 GNASQ5JWF2 1037 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 ATP6V0A1Q93050 837 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 FERMT2Q96AC1 680 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 GPRASP2Q96D09 838 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 MXRA8Q9BRK3 442 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 LMBRD1Q9NUN5 540 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 ATXN10Q9UBB4 475 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 DAAM1Q9Y4D1 1078 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 UBIAD1Q9Y5Z9 338 aa12.52□□□□□ -0.41
BRCA1-222ENST00000493919 FAM205CA6NFA0 338 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 BTBD18B2RXH4 712 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 M0R2N6 131 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 SKAP2O75563 359 aaPredicted RBP12.51□□□□□ -0.41
BRCA1-222ENST00000493919 CYP1A2P05177 515 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 COL6A1P12109 1028 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 PSMA3P25788 255 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 PEX5P50542 639 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 TBX4P57082 545 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 CEP55Q53EZ4 464 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 DPH6Q7L8W6 267 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 NECAB2Q7Z6G3 386 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 LILRB2Q8N423 598 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 GIPC2Q8TF65 315 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 SNX27Q96L92 541 aa12.51□□□□□ -0.41
BRCA1-222ENST00000493919 EIF2AQ9BY44 585 aaKnown RBP12.51□□□□□ -0.41
BRCA1-222ENST00000493919 UPF3AQ9H1J1 476 aaKnown RBP12.51□□□□□ -0.41
BRCA1-222ENST00000493919 A0A0B4J203 849 aa12.5□□□□□ -0.41
BRCA1-222ENST00000493919 FAM86B1E9PN63 330 aa12.5□□□□□ -0.41
BRCA1-222ENST00000493919 H0Y3Z8 333 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms