RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 KCNT2Q6UVM3 1135 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 GPIHBP1Q8IV16 184 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 CPB2Q96IY4 423 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 PHOX2BQ99453 314 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 POLR3FQ9H1D9 316 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-214ENST00000493608 TUFT1Q9NNX1 390 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 AGPAT5Q9NUQ2 364 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 MUC3AQ02505 3323 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 INO80B-WBP1J3KQ70 363 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 OFD1O75665 1012 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 GLRA2P23416 452 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 AFF1P51825 1210 aaKnown RBP11.84□□□□□ -0.51
COL6A3-214ENST00000493608 PTENP60484 403 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 ADAM15Q13444 863 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 CAPSQ13938 189 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 MXD4Q14582 209 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-214ENST00000493608 CTC1Q2NKJ3 1217 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 UBXN11Q5T124 520 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 PLPP4Q5VZY2 271 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 LRRC43Q8N309 656 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 ERMNQ8TAM6 284 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 ZNF558Q96NG5 402 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 NACC1Q96RE7 527 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 POLR3CQ9BUI4 534 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-214ENST00000493608 GBP3Q9H0R5 595 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 CD320Q9NPF0 282 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 TLR9Q9NR96 1032 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 DAXXQ9UER7 740 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-214ENST00000493608 LRWD1Q9UFC0 647 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 PCDHB2Q9Y5E7 798 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 BDP1A6H8Y1 2624 aa11.84□□□□□ -0.51
COL6A3-214ENST00000493608 H3BQV1 296 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 ZNF623O75123 536 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 ZC3H11AO75152 810 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 TBX10O75333 385 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 ERLIN2O94905 339 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 SKIP12755 728 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 XRCC6P12956 609 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 RPA1P27694 616 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 CDC25AP30304 524 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 GGCXP38435 758 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 CCT6AP40227 531 aaKnown RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 TRAPPC10P48553 1259 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 NDUFV1P49821 464 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 BCAR1P56945 870 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 RBM10P98175 930 aaKnown RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 ORC2Q13416 577 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 TFDP1Q14186 410 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 COL19A1Q14993 1142 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 IL17AQ16552 155 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 AGMOQ6ZNB7 445 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 CDR2LQ86X02 465 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 MRPS27Q92552 414 aaKnown RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 TRAIPQ9BWF2 469 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 EIF2AQ9BY44 585 aaKnown RBP11.83□□□□□ -0.52
COL6A3-214ENST00000493608 NRDE2Q9H7Z3 1164 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 TLE6Q9H808 572 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 SPG21Q9NZD8 308 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 KIAA1024Q9UPX6 916 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 SMC3Q9UQE7 1217 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 HES2Q9Y543 173 aa11.83□□□□□ -0.52
COL6A3-214ENST00000493608 LRRIQ4A6NIV6 560 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 PP2D1A8MPX8 630 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 HIDE1A8MVS5 230 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 B4GALT5O43286 388 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 NCK2O43639 380 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 TSPAN1O60635 241 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 CA8P35219 290 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 ALDH7A1P49419 539 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 RAB27AP51159 221 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 PLCB3Q01970 1234 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 KRT17Q04695 432 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 UBE3AQ05086 875 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 RNASELQ05823 741 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 MBTD1Q05BQ5 628 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 CSPP1Q1MSJ5 1256 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 NOMO2Q5JPE7 1267 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 GLB1LQ6UWU2 654 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 TMC7Q7Z402 723 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 MRPL10Q7Z7H8 261 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 TMEM173Q86WV6 379 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 ZNF280BQ86YH2 543 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 SLC39A11Q8N1S5 342 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 SMG8Q8ND04 991 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 PPP2R3CQ969Q6 453 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 PGBD4Q96DM1 585 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 TCF25Q9BQ70 676 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 APOL6Q9BWW8 343 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 ENTPD7Q9NQZ7 604 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 TBC1D13Q9NVG8 400 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 DNAJB4Q9UDY4 337 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 PUF60Q9UHX1 559 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 DBR1Q9UK59 544 aaKnown RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 BARX2Q9UMQ3 279 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-214ENST00000493608 USP20Q9Y2K6 914 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 KIF3AQ9Y496 699 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 C5orf42Q9H799 3197 aa11.82□□□□□ -0.52
COL6A3-214ENST00000493608 ARHGEF35A5YM69 484 aa11.81□□□□□ -0.52
COL6A3-214ENST00000493608 FSCN2O14926 492 aa11.81□□□□□ -0.52
COL6A3-214ENST00000493608 B4GALT3O60512 393 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms