RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CDC27P30260 824 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 ATXN1P54253 815 aaKnown RBP15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 EXOSC10Q01780 885 aaKnown RBP15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 LMNB2Q03252 620 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 PRKCQQ04759 706 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 DSC1Q08554 894 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 LRCH2Q5VUJ6 765 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 GET4Q7L5D6 327 aaPredicted RBP15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 COLGALT2Q8IYK4 626 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 CNNM3Q8NE01 707 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 BICD2Q8TD16 824 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 SECISBP2LQ93073 1101 aaKnown RBP15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 PHKBQ93100 1093 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 NLRP4Q96MN2 994 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 PIDD1Q9HB75 910 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 CHST7Q9NS84 486 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 FNIP2Q9P278 1114 aa15.98■□□□□ 0.15
PRPF40A-211ENST00000493468 LAMTOR5O43504 91 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 PSMD10O75832 226 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 POMCP01189 267 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 USP11P51784 963 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 CREMQ03060 361 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 UBXN11Q5T124 520 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 B3GNT9Q6UX72 402 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 RSPO2Q6UXX9 243 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 TAS1R1Q7RTX1 841 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 SRGAP1Q7Z6B7 1085 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 ZBTB44Q8NCP5 570 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 NELL1Q92832 810 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 RTKNQ9BST9 563 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 EPC1Q9H2F5 836 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 PRG3Q9Y2Y8 225 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 CHD8Q9HCK8 2581 aa15.97■□□□□ 0.15
PRPF40A-211ENST00000493468 CCDC196A0A1B0GTZ2 297 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 TMEM150BA6NC51 233 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 TGM5O43548 720 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 EDIL3O43854 480 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 LILRB5O75023 590 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 LRRN2O75325 713 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 HOXA11P31270 313 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 RNF20Q5VTR2 975 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 LILRA6Q6PI73 481 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 DHX32Q7L7V1 743 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 MIER3Q7Z3K6 550 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 KSR1Q8IVT5 923 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 CCDC136Q96JN2 1154 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 MBOAT7Q96N66 472 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 SPATA6Q9NWH7 488 aaPredicted RBP15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 CDV3Q9UKY7 258 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 SMG5Q9UPR3 1016 aaKnown RBP15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 COL4A3BPQ9Y5P4 624 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 NID2Q14112 1375 aa15.96■□□□□ 0.15
PRPF40A-211ENST00000493468 USP24Q9UPU5 2620 aa15.96■□□□□ 0.14
PRPF40A-211ENST00000493468 COL4A3Q01955 1670 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 KLF18A0A0U1RQI7 1052 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 GAS2O43903 313 aaKnown RBP15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 ZMYND10O75800 440 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 FSHRP23945 695 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 OR1G1P47890 313 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 GPC5P78333 572 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 MLF2Q15773 248 aaPredicted RBP15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 Q4G0T1 1027 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 MTSS1LQ765P7 747 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 CCDC148Q8NFR7 591 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 ATRIPQ8WXE1 791 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 FGF14Q92915 247 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 ESYT1Q9BSJ8 1104 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 ZSCAN32Q9NX65 697 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 CDH7Q9ULB5 785 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 PPME1Q9Y570 386 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 ARID2Q68CP9 1835 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 CHD6Q8TD26 2715 aa15.95■□□□□ 0.14
PRPF40A-211ENST00000493468 CFAP47Q6ZTR5 3102 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 PRPF3O43395 683 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 NR1I2O75469 434 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 SPATA31D3P0C874 917 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 ITGA4P13612 1032 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 PFKPQ01813 784 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 PCBP1Q15365 356 aaKnown RBP eCLIP15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 USP41Q3LFD5 358 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 PARM1Q6UWI2 310 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 SPATA31D4Q6ZUB0 917 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 ANO5Q75V66 913 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 PALB2Q86YC2 1186 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 EXOC8Q8IYI6 725 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 SMG8Q8ND04 991 aaKnown RBP15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 CCDC51Q96ER9 411 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 SH2D3AQ9BRG2 576 aa15.94■□□□□ 0.14
PRPF40A-211ENST00000493468 ZMYM2Q9UBW7 1377 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 ARL5CA6NH57 179 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 DDX11L8A8MPP1 907 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 TBC1D4O60343 1298 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 ADRB1P08588 477 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 HNRNPA1P09651 372 aaKnown RBP eCLIP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 MYBP10242 640 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 TGM1P22735 817 aa15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 ADD1P35611 737 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 RPS9P46781 194 aaKnown RBP15.93■□□□□ 0.14
PRPF40A-211ENST00000493468 PSMC5P62195 406 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms