RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 TRPC3Q13507 836 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ITIH4Q14624 930 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 GRAMD1BQ3KR37 738 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 SCYL2Q6P3W7 929 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ERICH1Q86X53 443 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ACCSQ96QU6 501 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CTNNAL1Q9UBT7 734 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 PITPNM2Q9BZ72 1349 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CCDC195A0A1B0GUA6 201 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 DDX3XO00571 662 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 TLR2O60603 784 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 COILP38432 576 aaPredicted RBP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 RPL21P46778 160 aaKnown RBP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 VAMP7P51809 220 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 LGSNQ5TDP6 509 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 RCSD1Q6JBY9 416 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CATSPER3Q86XQ3 398 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 COL23A1Q86Y22 540 aaPredicted RBP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CCDC124Q96CT7 223 aaKnown RBP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 WNT8AQ9H1J5 351 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ANKFY1Q9P2R3 1169 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 MCM8Q9UJA3 840 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ARFIP2P53365 341 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 PSMC6P62333 389 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 RASA3Q14644 834 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 LRRC55Q6ZSA7 311 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CENPUQ71F23 418 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 CD302Q8IX05 232 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 PIP4K2CQ8TBX8 421 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 TNFRSF25Q93038 417 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 ELMO3Q96BJ8 720 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 C8orf37Q96NL8 207 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 VCX3AQ9NNX9 186 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 AIPL1Q9NZN9 384 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 PPP1R1BQ9UD71 204 aaPredicted RBP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 FAM47DPA6NHR8 397 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 NVLO15381 856 aaKnown RBP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ALAS1P13196 640 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 KDSRQ06136 332 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 DDR1Q08345 913 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ERMARDQ5T6L9 678 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TRMT10CQ7L0Y3 403 aaKnown RBP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 NT5DC3Q86UY8 548 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 MREGQ8N565 214 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SMC1BQ8NDV3 1235 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SLC20A1Q8WUM9 679 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 CALN1Q9BXU9 219 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ARHGEF10LQ9HCE6 1279 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SLC16A4O15374 487 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 GNAT1P11488 350 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 LIG4P49917 911 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ABCB5Q2M3G0 1257 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 LMBRD2Q68DH5 695 aaPredicted RBP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ZNF662Q6ZS27 426 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TSNARE1Q96NA8 513 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TTYH3Q9C0H2 523 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 MTMR4Q9NYA4 1195 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ADAM22Q9P0K1 906 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 KCNA3P22001 575 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 PIK3CAP42336 1068 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SERPINB4P48594 390 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 PTENP60484 403 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 LMNB2Q03252 620 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 RNASELQ05823 741 aaKnown RBP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ANKRD20A2Q5SQ80 823 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ANKRD20A1Q5TYW2 823 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 C1orf146Q5VVC0 180 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SPATA24Q86W54 205 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 XXYLT1Q8NBI6 393 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 JDP2Q8WYK2 163 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 SLC4A7Q9Y6M7 1214 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TNS3Q68CZ2 1445 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 A8MUI8 341 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 FOXO6A8MYZ6 492 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 H7C0C1 242 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TOM1L1O75674 476 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 FECHP22830 423 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ATP5OP48047 213 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 TMPRSS15P98073 1019 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 P3H1Q32P28 736 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 JMJD4Q9H9V9 463 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ZFATQ9P243 1243 aa13.68□□□□□ -0.22
SHOX2-205ENST00000490689 MARCOQ9UEW3 520 aaPredicted RBP13.68□□□□□ -0.22
SHOX2-205ENST00000490689 ZCCHC18P0CG32 403 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 GHRP10912 638 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 KCNA1Q09470 495 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 BRDTQ58F21 947 aaPredicted RBP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 SLC13A5Q86YT5 568 aaPredicted RBP13.67□□□□□ -0.22
SHOX2-205ENST00000490689 C4orf32Q8N8J7 132 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 CPA5Q8WXQ8 436 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 KRT35Q92764 455 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 ARHGEF26Q96DR7 871 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 IWS1Q96ST2 819 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 ZWILCHQ9H900 591 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 CD209Q9NNX6 404 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 MYO3BQ8WXR4 1341 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 CACNA1FO60840 1977 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 KCNQ2O43526 872 aa13.67□□□□□ -0.22
SHOX2-205ENST00000490689 GSTA1P08263 222 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms