RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 SNX2O60749 519 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 FXR1P51114 621 aaKnown RBP eCLIP18.7■□□□□ 0.58
NPHP4-209ENST00000489180 FBXW10Q5XX13 1052 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 RNF135Q8IUD6 432 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 PSPC1Q8WXF1 523 aaKnown RBP18.7■□□□□ 0.58
NPHP4-209ENST00000489180 FEM1BQ9UK73 627 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 ADORA2BP29275 332 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 NME3Q13232 169 aa18.7■□□□□ 0.58
NPHP4-209ENST00000489180 RC3H1Q5TC82 1133 aaKnown RBP18.7■□□□□ 0.58
NPHP4-209ENST00000489180 HEATR6Q6AI08 1181 aaKnown RBP18.7■□□□□ 0.58
NPHP4-209ENST00000489180 PIK3R2O00459 728 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 HSPA9P38646 679 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CAPRIN1Q14444 709 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 MORF4L2Q15014 288 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 SPATA17Q96L03 361 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 ING2Q9H160 280 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 NDE1Q9NXR1 346 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CFAP74Q9C0B2 1584 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 NCAPD2Q15021 1401 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 MDH1P40925 334 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CIAPIN1Q6FI81 312 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 C16orf87Q6PH81 154 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 ZNF473Q8WTR7 871 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CALR3Q96L12 384 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 RAPGEF5Q92565 580 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 SARS2Q9NP81 518 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 LAMC1P11047 1609 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 MYCP01106 439 aaPredicted RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 DEUP1Q05D60 604 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 DHX34Q14147 1143 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CLEC4GQ6UXB4 293 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 TRIM33Q9UPN9 1127 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 DNAJC6O75061 913 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 CHN1P15882 459 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 DPYDQ12882 1025 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 LONRF1Q17RB8 773 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 FAM102AQ5T9C2 384 aaPredicted RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 NBPF10Q6P3W6 841 aaKnown RBP18.69■□□□□ 0.58
NPHP4-209ENST00000489180 ATP11CQ8NB49 1132 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 SLC30A5Q8TAD4 765 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 RGL1Q9NZL6 768 aa18.69■□□□□ 0.58
NPHP4-209ENST00000489180 RNF103-CHMP3A0A140T963 221 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 TBXAS1P24557 533 aaPredicted RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 FAM217BQ9NTX9 383 aaPredicted RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 DBR1Q9UK59 544 aaKnown RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 PHF20L1A8MW92 1017 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 PYGBP11216 843 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 BCAR1P56945 870 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 KCNA1Q09470 495 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 TSGA10IPQ3SY00 556 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 SLC35G2Q8TBE7 412 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 IFT43Q96FT9 208 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 DHX35Q9H5Z1 703 aaKnown RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 ZNF609O15014 1411 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 CDHR2Q9BYE9 1310 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 hCG_2014768A0A024R1R8 64 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 F5H6K3 240 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 ZBTB22O15209 634 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 MMP10P09238 476 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 SMARCA1P28370 1054 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 ALDH18A1P54886 795 aaKnown RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 KRT76Q01546 638 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 KLRC3Q07444 240 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 ATG9AQ7Z3C6 839 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 SPATA21Q7Z572 469 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 TEX2Q8IWB9 1127 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 SCN4BQ8IWT1 228 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 SCG3Q8WXD2 468 aaKnown RBP18.68■□□□□ 0.58
NPHP4-209ENST00000489180 EPN3Q9H201 632 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 TRIM66O15016 1216 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 MYBL1P10243 752 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 AKR1B1P15121 316 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 KLK7P49862 253 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 KCNB1Q14721 858 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 RAD9BQ6WBX8 426 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 FRMD5Q7Z6J6 570 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 CCDC90BQ9GZT6 254 aa18.68■□□□□ 0.58
NPHP4-209ENST00000489180 PPP1R37O75864 691 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 CUL3Q13618 768 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 GRAMD4Q6IC98 578 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 SRLQ86TD4 932 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 GPD1LQ8N335 351 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 MASTLQ96GX5 879 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 SH2D3AQ9BRG2 576 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 TRIM9Q9C026 710 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 BCORL1Q5H9F3 1711 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 SYCE1LA8MT33 242 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 ECE2O60344 883 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 ANP32DO95626 131 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 KRT7P08729 469 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 ZHX2Q9Y6X8 837 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 HUS1O60921 280 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 TNFAIP2Q03169 654 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 EFTUD2Q15029 972 aaKnown RBP eCLIP18.67■□□□□ 0.58
NPHP4-209ENST00000489180 RASGRP2Q7LDG7 609 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 SZRD1Q7Z422 152 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 RBAKQ9NYW8 714 aaPredicted RBP18.67■□□□□ 0.58
NPHP4-209ENST00000489180 CDC42BPGQ6DT37 1551 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 RNF146Q9NTX7 359 aa18.67■□□□□ 0.58
NPHP4-209ENST00000489180 RBM12Q9NTZ6 932 aaKnown RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms