RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 MRPS17Q9Y2R5 130 aaKnown RBP10.43□□□□□ -0.74
COL17A1-207ENST00000488320 SLC12A7Q9Y666 1083 aa10.43□□□□□ -0.74
COL17A1-207ENST00000488320 TAF6LQ9Y6J9 622 aa10.43□□□□□ -0.74
COL17A1-207ENST00000488320 WDR81Q562E7 1941 aa10.43□□□□□ -0.74
COL17A1-207ENST00000488320 CHD8Q9HCK8 2581 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 CNTNAP2Q9UHC6 1331 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 COL4A3Q01955 1670 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 DOCK6Q96HP0 2047 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 ZNF862O60290 1169 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 LRP3O75074 770 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 ZMYND10O75800 440 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 TARSP26639 723 aaKnown RBP10.42□□□□□ -0.74
COL17A1-207ENST00000488320 MCM5P33992 734 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 NTHL1P78549 312 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 SETQ01105 290 aaPredicted RBP10.42□□□□□ -0.74
COL17A1-207ENST00000488320 PRKCEQ02156 737 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 DSG1Q02413 1049 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 DRP2Q13474 957 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 MTERF2Q49AM1 385 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 N4BP2L1Q5TBK1 243 aaPredicted RBP10.42□□□□□ -0.74
COL17A1-207ENST00000488320 PPP1R18Q6NYC8 613 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 PRR23CQ6ZRP0 262 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 TMTC3Q6ZXV5 915 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 TEX2Q8IWB9 1127 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 FANCBQ8NB91 859 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 CLDN23Q96B33 292 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 NLRP4Q96MN2 994 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 KXD1Q9BQD3 176 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 PHF20Q9BVI0 1012 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 COLEC11Q9BWP8 271 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 DISC1Q9NRI5 854 aa10.42□□□□□ -0.74
COL17A1-207ENST00000488320 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.42□□□□□ -0.74
COL17A1-207ENST00000488320 SUCLA2Q9P2R7 463 aaPredicted RBP10.42□□□□□ -0.74
COL17A1-207ENST00000488320 IGLV3-22A0A075B6J6 115 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 SH2B2O14492 632 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 CHMP2AO43633 222 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 GDF9O60383 454 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 C1RP00736 705 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 CYP3A4P08684 503 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 ITGA4P13612 1032 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 RPS9P46781 194 aaKnown RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 ADCY1Q08828 1119 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 MTAPQ13126 283 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 SIM2Q14190 667 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 CSRP2Q16527 193 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 USP41Q3LFD5 358 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 PRR16Q569H4 304 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 TYW1BQ6NUM6 668 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 MRPL10Q7Z7H8 261 aaKnown RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 ZNF410Q86VK4 478 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 MICU3Q86XE3 530 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 KSR1Q8IVT5 923 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 FGF13Q92913 245 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 TMEM87BQ96K49 555 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 B3GALT6Q96L58 329 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 MTA3Q9BTC8 594 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 RWDD1Q9H446 243 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 UBN1Q9NPG3 1134 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 PRMT8Q9NR22 394 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 MARCH5Q9NX47 278 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 SEPT9Q9UHD8 586 aaPredicted RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 NDRG2Q9UN36 371 aaKnown RBP10.41□□□□□ -0.74
COL17A1-207ENST00000488320 USP24Q9UPU5 2620 aa10.41□□□□□ -0.74
COL17A1-207ENST00000488320 FOXD2O60548 495 aaPredicted RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 PROS1P07225 676 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 HOXB3P14651 431 aaPredicted RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 RPL17P18621 184 aaKnown RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 PMLP29590 882 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 LIFRP42702 1097 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 CLK2P49760 499 aaKnown RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 CREMQ03060 361 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 AASDHQ4L235 1098 aaPredicted RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 PPM1LQ5SGD2 360 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 LIN9Q5TKA1 542 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 LILRA6Q6PI73 481 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 COLGALT2Q8IYK4 626 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 SH2D3AQ9BRG2 576 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 HEBP1Q9NRV9 189 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 CHST7Q9NS84 486 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 FNIP2Q9P278 1114 aa10.4□□□□□ -0.74
COL17A1-207ENST00000488320 V9GY48 417 aaPredicted RBP10.4□□□□□ -0.74
COL17A1-207ENST00000488320 ATRXP46100 2492 aa10.4□□□□□ -0.75
COL17A1-207ENST00000488320 DDX11L8A8MPP1 907 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 MAN2B1O00754 1011 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 CCL16O15467 120 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 XYLBO75191 536 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 TADA2AO75478 443 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 PAPLNO95428 1278 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 UGCGQ16739 394 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 FUT10Q6P4F1 479 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 CNNM3Q8NE01 707 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 ITFG1Q8TB96 612 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 LRRC2Q9BYS8 371 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 LMAN1LQ9HAT1 526 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 AGPAT5Q9NUQ2 364 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 RBM28Q9NW13 759 aaKnown RBP10.39□□□□□ -0.75
COL17A1-207ENST00000488320 BARHL2Q9NY43 387 aa10.39□□□□□ -0.75
COL17A1-207ENST00000488320 TDRD15B5MCY1 1934 aaKnown RBP10.39□□□□□ -0.75
COL17A1-207ENST00000488320 F8W810 466 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms