RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 SP9P0CG40 484 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 IFNAR1P17181 557 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 DSG1Q02413 1049 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 KRT32Q14532 448 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 BMP2KLQ5H9B9 411 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 PHLDB3Q6NSJ2 640 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 CYP26C1Q6V0L0 522 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 FBXL16Q8N461 479 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 SMG7Q92540 1137 aaKnown RBP17.2■□□□□ 0.34
MCF2L-228ENST00000487354 B3GALT6Q96L58 329 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 SLC26A6Q9BXS9 759 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 EIF2AQ9BY44 585 aaKnown RBP17.2■□□□□ 0.34
MCF2L-228ENST00000487354 DHX33Q9H6R0 707 aaKnown RBP17.2■□□□□ 0.34
MCF2L-228ENST00000487354 CHST7Q9NS84 486 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 MIOSQ9NXC5 875 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 EPG5Q9HCE0 2579 aa17.2■□□□□ 0.34
MCF2L-228ENST00000487354 SLC37A4O43826 429 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 HMGB1P09429 215 aaKnown RBP17.19■□□□□ 0.34
MCF2L-228ENST00000487354 SPATA31D3P0C874 917 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 GLUD2P49448 558 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 PSMC5P62195 406 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 SPATA31D4Q6ZUB0 917 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 ST13P5Q8NFI4 369 aaPredicted RBP17.19■□□□□ 0.34
MCF2L-228ENST00000487354 PRPF31Q8WWY3 499 aaKnown RBP17.19■□□□□ 0.34
MCF2L-228ENST00000487354 TMEM143Q96AN5 459 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 NCOA5Q9HCD5 579 aaKnown RBP17.19■□□□□ 0.34
MCF2L-228ENST00000487354 SH3GLB2Q9NR46 395 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 ARHGEF3Q9NR81 526 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 SLC2A4RGQ9NR83 387 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 KANSL3Q9P2N6 904 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 IPPQ9Y573 584 aa17.19■□□□□ 0.34
MCF2L-228ENST00000487354 LRRN2O75325 713 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 LAMP2P13473 410 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 MLH1P40692 756 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 LAMTOR4Q0VGL1 99 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 SPECC1Q5M775 1068 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 LILRA6Q6PI73 481 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 SRGAP1Q7Z6B7 1085 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 DCLK2Q8N568 766 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 SUMF1Q8NBK3 374 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 GSTCDQ8NEC7 633 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 KCNG4Q8TDN1 519 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 STAMQ92783 540 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 NXPE3Q969Y0 559 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 ZFP42Q96MM3 310 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 FAM193BQ96PV7 902 aaPredicted RBP17.18■□□□□ 0.34
MCF2L-228ENST00000487354 GAD1Q99259 594 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 RPP25Q9BUL9 199 aaKnown RBP17.18■□□□□ 0.34
MCF2L-228ENST00000487354 FOXQ1Q9C009 403 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 NT5C3AQ9H0P0 336 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 DLL3Q9NYJ7 618 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 PCDHA4Q9UN74 947 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 HES2Q9Y543 173 aa17.18■□□□□ 0.34
MCF2L-228ENST00000487354 ARL5CA6NH57 179 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 TGM5O43548 720 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 TSPAN1O60635 241 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 SRGAP2CP0DJJ0 459 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 OR1G1P47890 313 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 SCNN1GP51170 649 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 EVCP57679 992 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 PPP2R5CQ13362 524 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 MOXD1Q6UVY6 613 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 GET4Q7L5D6 327 aaPredicted RBP17.17■□□□□ 0.34
MCF2L-228ENST00000487354 DGLUCYQ7Z3D6 616 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 PJA1Q8NG27 643 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 HDAC7Q8WUI4 952 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 JAKMIP1Q96N16 626 aaKnown RBP17.17■□□□□ 0.34
MCF2L-228ENST00000487354 GPR62Q9BZJ7 368 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 BMP2KQ9NSY1 1161 aaPredicted RBP17.17■□□□□ 0.34
MCF2L-228ENST00000487354 SNX14Q9Y5W7 946 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 NUMBLQ9Y6R0 609 aa17.17■□□□□ 0.34
MCF2L-228ENST00000487354 SPTBN2O15020 2390 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 STK25O00506 426 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 C1RP00736 705 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 PDIA3P30101 505 aaKnown RBP17.16■□□□□ 0.34
MCF2L-228ENST00000487354 NONOQ15233 471 aaKnown RBP eCLIP17.16■□□□□ 0.34
MCF2L-228ENST00000487354 PALB2Q86YC2 1186 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 C1orf210Q8IVY1 113 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 DAGLBQ8NCG7 672 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 PSPC1Q8WXF1 523 aaKnown RBP17.16■□□□□ 0.34
MCF2L-228ENST00000487354 JPH2Q9BR39 696 aaPredicted RBP17.16■□□□□ 0.34
MCF2L-228ENST00000487354 PRKD2Q9BZL6 878 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 KCNMB3Q9NPA1 279 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 XPNPEP1Q9NQW7 623 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 ZDHHC7Q9NXF8 308 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 SSX2IPQ9Y2D8 614 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 SIT1Q9Y3P8 196 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 COL4A2P08572 1712 aa17.16■□□□□ 0.34
MCF2L-228ENST00000487354 TPRP12270 2363 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 ITGA4P13612 1032 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 RPL17P18621 184 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 RPS6KB1P23443 525 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 QARSP47897 775 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 NLRP5P59047 1200 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 STARD6P59095 220 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 CCT2P78371 535 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 FGD1P98174 961 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 AKAP17AQ02040 695 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 EMC2Q15006 297 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 AMHR2Q16671 573 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms