RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 RFWD3Q6PCD5 774 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 USP17L2Q6R6M4 530 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 GPBP1Q86WP2 473 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 CCNJLQ8IV13 435 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 SRRM1Q8IYB3 904 aaKnown RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 ATL2Q8NHH9 583 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 C7orf43Q8WVR3 580 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 SCG3Q8WXD2 468 aaKnown RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 UIMC1Q96RL1 719 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 MKNK2Q9HBH9 465 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 DNAJC17Q9NVM6 304 aaKnown RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 STOML1Q9UBI4 398 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 PHTF1Q9UMS5 762 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 KIAA1024Q9UPX6 916 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 STARD13Q9Y3M8 1113 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 TMEM110-MUSTN1A8MSY1 372 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 LMNAP02545 664 aaKnown RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 GSTA2P09210 222 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 PLA2G4BP0C869 781 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 CYP19A1P11511 503 aaPredicted RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 HOXD13P35453 343 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 SOX5P35711 763 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 CASP4P49662 377 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 LMNB2Q03252 620 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 CALCOCO2Q13137 446 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 DNAJC3Q13217 504 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 DYNC1I2Q13409 638 aaKnown RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 MOGSQ13724 837 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 ZC2HC1CQ53FD0 456 aaPredicted RBP11.41□□□□□ -0.58
CCDC171-208ENST00000486641 C12orf60Q5U649 245 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 SNX30Q5VWJ9 437 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 TRIM74Q86UV6 250 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 TRIM73Q86UV7 250 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 PALB2Q86YC2 1186 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 FBXO41Q8TF61 875 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 MAIP1Q8WWC4 291 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 SPOCK2Q92563 424 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 HAS1Q92839 578 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 NAALADL1Q9UQQ1 740 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 TRAF3IP3Q9Y228 551 aa11.41□□□□□ -0.58
CCDC171-208ENST00000486641 MROH7Q68CQ1 1323 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 PASKQ96RG2 1323 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.4□□□□□ -0.58
CCDC171-208ENST00000486641 ERVV-1B6SEH8 477 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 ECE2O60344 883 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 TTC4O95801 387 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 PYGMP11217 842 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 CYP11B2P19099 503 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 KCNA3P22001 575 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 IL9RQ01113 521 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 GIT2Q14161 759 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 CCDC6Q16204 474 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 CAVIN4Q5BKX8 364 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 ARSHQ5FYA8 562 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 BICDL1Q6ZP65 573 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 C4orf50Q6ZRC1 276 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 UBL4BQ8N7F7 174 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 SLC35C1Q96A29 364 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 FAM84BQ96KN1 310 aaPredicted RBP11.4□□□□□ -0.58
CCDC171-208ENST00000486641 SLC4A9Q96Q91 983 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 LBHD1Q9BQE6 289 aaPredicted RBP11.4□□□□□ -0.58
CCDC171-208ENST00000486641 SYT11Q9BT88 431 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 OCEL1Q9H607 264 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 SLCO1B3Q9NPD5 702 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 SEPT11Q9NVA2 429 aaKnown RBP11.4□□□□□ -0.58
CCDC171-208ENST00000486641 COL4A1P02462 1669 aa11.4□□□□□ -0.58
CCDC171-208ENST00000486641 TRAFD1O14545 582 aaPredicted RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 DCTN3O75935 186 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 SKIP12755 728 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 CHRNB2P17787 502 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 MARK3P27448 753 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 PTPN4P29074 926 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 GSTT1P30711 240 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 RASSF2P50749 326 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 DRAP1Q14919 205 aaPredicted RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 CYP1B1Q16678 543 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 KNOP1Q1ED39 458 aaKnown RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 PPP1R21Q6ZMI0 780 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 MIGA2Q7L4E1 593 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 EPM2AIP1Q7L775 607 aaPredicted RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 ZC3H18Q86VM9 953 aaKnown RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 SLC44A5Q8NCS7 719 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 GATA6Q92908 595 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 COA7Q96BR5 231 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 ZSWIM1Q9BR11 485 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 UBA5Q9GZZ9 404 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 TLE6Q9H808 572 aa11.4□□□□□ -0.59
CCDC171-208ENST00000486641 METTL5Q9NRN9 209 aaKnown RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 CHCHD3Q9NX63 227 aaKnown RBP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 NIP7Q9Y221 180 aaKnown RBP eCLIP11.4□□□□□ -0.59
CCDC171-208ENST00000486641 ADGRA3Q8IWK6 1321 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 ANKRD62A6NC57 917 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 MAGEB2O15479 319 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 TJP3O95049 919 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 KRT18P05783 430 aaKnown RBP11.39□□□□□ -0.59
CCDC171-208ENST00000486641 TNFAIP3P21580 790 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 PRDX5P30044 214 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 RCN1Q15293 331 aa11.39□□□□□ -0.59
CCDC171-208ENST00000486641 SIX1Q15475 284 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms