RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 WDR5P61964 334 aaKnown RBP9.08□□□□□ -0.96
SF3A1-208ENST00000485618 FAM189BP81408 668 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 GPNMBQ14956 572 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 POSTNQ15063 836 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 SKIV2LQ15477 1246 aaKnown RBP9.08□□□□□ -0.96
SF3A1-208ENST00000485618 DCAF4L1Q3SXM0 396 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 SLC27A1Q6PCB7 646 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 ZPBP2Q6X784 338 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 KRBA2Q6ZNG9 492 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 HAUS6Q7Z4H7 955 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 HERC6Q8IVU3 1022 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 SYCP3Q8IZU3 236 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 FMR1NBQ8N0W7 255 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-208ENST00000485618 TMEM40Q8WWA1 233 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 KCNN1Q92952 543 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 TOP1MTQ969P6 601 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 ZNF668Q96K58 619 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-208ENST00000485618 ACCSQ96QU6 501 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 YME1L1Q96TA2 773 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 RAD9AQ99638 391 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 EXOC1Q9NV70 894 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 TMEM161AQ9NX61 479 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 ARHGAP28Q9P2N2 729 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 KANSL3Q9P2N6 904 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 PCDHA11Q9Y5I1 949 aa9.08□□□□□ -0.96
SF3A1-208ENST00000485618 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.08□□□□□ -0.96
SF3A1-208ENST00000485618 CNTNAP2Q9UHC6 1331 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 A0A1B0GUA9 196 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 CLDN3O15551 220 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 ACTN4O43707 911 aaKnown RBP9.07□□□□□ -0.96
SF3A1-208ENST00000485618 TSPAN1O60635 241 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 CSDE1O75534 798 aaKnown RBP9.07□□□□□ -0.96
SF3A1-208ENST00000485618 TOM1L1O75674 476 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 UPP2O95045 317 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 GCNT3O95395 438 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 MBD3O95983 291 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 LIG4P49917 911 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 NCKAP1LP55160 1127 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 SNRPFP62306 86 aaKnown RBP9.07□□□□□ -0.96
SF3A1-208ENST00000485618 MAPK7Q13164 816 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 ATF7IP2Q5U623 682 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 GLB1LQ6UWU2 654 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 ZNF720Q7Z2F6 126 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 DAW1Q8N136 415 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 TMEM161BQ8NDZ6 487 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 GOLGA5Q8TBA6 731 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 URGCPQ8TCY9 931 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 BSNDQ8WZ55 320 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 DNAJC19Q96DA6 116 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 CHAMP1Q96JM3 812 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 GSDMAQ96QA5 445 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 AAASQ9NRG9 546 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 TBX20Q9UMR3 447 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 RWDD3Q9Y3V2 267 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 PCDHB2Q9Y5E7 798 aa9.07□□□□□ -0.96
SF3A1-208ENST00000485618 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 FRMD3A2A2Y4 597 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 C9IYK1 514 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 HNRNPDLO14979 420 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 KIAA0391O15091 583 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 NR1I2O75469 434 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 GJB5O95377 273 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 RPN1P04843 607 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 CA3P07451 260 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 MCF2P10911 925 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 ITGA4P13612 1032 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 ARF4P18085 180 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 FGFR4P22455 802 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 PPP1R2P41236 205 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 YARSP54577 528 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 GTF2BQ00403 316 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 CACNB1Q02641 598 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 COASYQ13057 564 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 STIM1Q13586 685 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 DSC3Q14574 896 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 FAM26FQ5R3K3 315 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 HS2ST1Q7LGA3 356 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 SFR1Q86XK3 245 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 ECHDC2Q86YB7 292 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 RNF169Q8NCN4 708 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 STAMQ92783 540 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 SMARCE1Q969G3 411 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 NECAB3Q96P71 396 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 FAM193BQ96PV7 902 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 CCDC94Q9BW85 323 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 MRPL9Q9BYD2 267 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 TMX1Q9H3N1 280 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 MINDY3Q9H8M7 445 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 POLD4Q9HCU8 107 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 TOPORSQ9NS56 1045 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 FAM105AQ9NUU6 356 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 CGNQ9P2M7 1197 aaKnown RBP9.06□□□□□ -0.96
SF3A1-208ENST00000485618 TNFSF13BQ9Y275 285 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 TANC1Q9C0D5 1861 aa9.06□□□□□ -0.96
SF3A1-208ENST00000485618 UBE4BO95155 1302 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 ARID2Q68CP9 1835 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 ZMYM2Q9UBW7 1377 aa9.05□□□□□ -0.96
SF3A1-208ENST00000485618 EIF3DO15371 548 aaKnown RBP eCLIP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 LDHAP00338 332 aaKnown RBP9.05□□□□□ -0.96
SF3A1-208ENST00000485618 IBSPP21815 317 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms