RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SURF1Q15526 300 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 AMHR2Q16671 573 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 KIZQ2M2Z5 673 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 DCAF4L1Q3SXM0 396 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 FBXO47Q5MNV8 452 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 NOTUMQ6P988 496 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 C11orf57Q6ZUT1 292 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-225ENST00000481502 TAS1R3Q7RTX0 852 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 FRMD5Q7Z6J6 570 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 KSR1Q8IVT5 923 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 CD302Q8IX05 232 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 SMYD4Q8IYR2 804 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-225ENST00000481502 XXYLT1Q8NBI6 393 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 DHX38Q92620 1227 aaKnown RBP9.03□□□□□ -0.96
SYNE1-225ENST00000481502 HPS3Q969F9 1004 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 HTATIP2Q9BUP3 242 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 CBX8Q9HC52 389 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 POLD4Q9HCU8 107 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 TRMT13Q9NUP7 481 aaKnown RBP9.03□□□□□ -0.96
SYNE1-225ENST00000481502 AGPAT5Q9NUQ2 364 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 TBX21Q9UL17 535 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 FRMD4BQ9Y2L6 1034 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 NFE2L3Q9Y4A8 694 aa9.03□□□□□ -0.96
SYNE1-225ENST00000481502 HTTP42858 3142 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 FSD2A1L4K1 749 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 KIAA0355O15063 1070 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 PMM2O15305 246 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 EXTL3O43909 919 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ZNF623O75123 536 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 CXCL10P02778 98 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 NR3C1P04150 777 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ADRB2P07550 413 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 TPM2P07951 284 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 CLTBP09497 229 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ZNF18P17022 549 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ZSCAN20P17040 1043 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 NR2F2P24468 414 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 HOXA11P31270 313 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 PSMC2P35998 433 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 AP3M2P53677 418 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 TLE2Q04725 743 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ZNF618Q5T7W0 954 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ATF7IP2Q5U623 682 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 CDKAL1Q5VV42 579 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 KLHL10Q6JEL2 608 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 ARMCX5Q6P1M9 558 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 SLC27A1Q6PCB7 646 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 MPZL3Q6UWV2 235 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 LRRC55Q6ZSA7 311 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 INTS8Q75QN2 995 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 LRRC8DQ7L1W4 858 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 CATSPER4Q7RTX7 472 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 NT5DC4Q86YG4 428 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 DHX40Q8IX18 779 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 HACE1Q8IYU2 909 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 BICD1Q96G01 975 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 MED15Q96RN5 788 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 OSMRQ99650 979 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 DUSP9Q99956 384 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 NOC4LQ9BVI4 516 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 SRRTQ9BXP5 876 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 FGFBP2Q9BYJ0 223 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 TRPV6Q9H1D0 765 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 MINDY3Q9H8M7 445 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 PLEKHA5Q9HAU0 1116 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 MAGEC2Q9UBF1 373 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 AGO2Q9UKV8 859 aaKnown RBP9.02□□□□□ -0.97
SYNE1-225ENST00000481502 CTNND2Q9UQB3 1225 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 MAPK8IP1Q9UQF2 711 aa9.02□□□□□ -0.97
SYNE1-225ENST00000481502 TRIP12Q14669 1992 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 GOLGA6L3A6NEY3 463 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ZNF233A6NK53 670 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ABLIM1O14639 778 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 OGTO15294 1046 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 P4HA2O15460 535 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 STX10O60499 249 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TSPAN1O60635 241 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 EXOC3O60645 756 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 EFCAB14O75071 495 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 MYCP01106 439 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TPM3P06753 285 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 CLTAP09496 248 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 IQCF3P0C7M6 154 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 EPB41P11171 864 aaKnown RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ARF4P18085 180 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 ADSSP30520 456 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 GTF2H1P32780 548 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 MRE11P49959 708 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 KCNA1Q09470 495 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 NOLC1Q14978 699 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TRIM60Q495X7 471 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TRAF7Q6Q0C0 670 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 SARM1Q6SZW1 724 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 GAS2L3Q86XJ1 694 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 NELFCDQ8IXH7 590 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 RPUSD2Q8IZ73 545 aaKnown RBP9.01□□□□□ -0.97
SYNE1-225ENST00000481502 GPD1LQ8N335 351 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 GLIS3Q8NEA6 775 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TMC2Q8TDI7 906 aa9.01□□□□□ -0.97
SYNE1-225ENST00000481502 TMEM40Q8WWA1 233 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms