RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 TMEM60Q9H2L4 133 aa12.67□□□□□ -0.38
CCM2-213ENST00000480658 KCND2Q9NZV8 630 aa12.67□□□□□ -0.38
CCM2-213ENST00000480658 CLEC1BQ9P126 229 aa12.67□□□□□ -0.38
CCM2-213ENST00000480658 DNM3Q9UQ16 869 aa12.67□□□□□ -0.38
CCM2-213ENST00000480658 IPPQ9Y573 584 aa12.67□□□□□ -0.38
CCM2-213ENST00000480658 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 LINC01565O15544 149 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 URODP06132 367 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 GALTP07902 379 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 PDCP20941 246 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 DLX2Q07687 328 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 GRIK3Q13003 919 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 KCNC3Q14003 757 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 CBX2Q14781 532 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 CLUL1Q15846 466 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 DCAF4L1Q3SXM0 396 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 ANKRD54Q6NXT1 300 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 POTEGQ6S5H5 508 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 PADI6Q6TGC4 694 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 AGMOQ6ZNB7 445 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 SNX29Q8TEQ0 813 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 LPPQ93052 612 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 AK8Q96MA6 479 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 RPS6KC1Q96S38 1066 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 ZBP1Q9H171 429 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 KCNH6Q9H252 994 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 NRDE2Q9H7Z3 1164 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 MINDY3Q9H8M7 445 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 MRPL17Q9NRX2 175 aaKnown RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 BARX2Q9UMQ3 279 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 FAN1Q9Y2M0 1017 aa12.66□□□□□ -0.38
CCM2-213ENST00000480658 USP15Q9Y4E8 981 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.66□□□□□ -0.38
CCM2-213ENST00000480658 ARL5CA6NH57 179 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 H0YCG3 227 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 ZBTB39O15060 712 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 MED24O75448 989 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 GLP2RO95838 553 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 ARF4P18085 180 aaPredicted RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 COL9A1P20849 921 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 ABCD1P33897 745 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 GTF2F1P35269 517 aaKnown RBP eCLIP12.65□□□□□ -0.38
CCM2-213ENST00000480658 MTHFRP42898 656 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 PTGDRQ13258 359 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 DMP1Q13316 513 aaPredicted RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 PRPF4BQ13523 1007 aaKnown RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 HERC4Q5GLZ8 1057 aaPredicted RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 UBXN11Q5T124 520 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 MCTP1Q6DN14 999 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 PDXDC1Q6P996 788 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 CYP26C1Q6V0L0 522 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 BRAPQ7Z569 592 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 ASAP3Q8TDY4 903 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 SUSD6Q92537 303 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 TMX3Q96JJ7 454 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 COLEC11Q9BWP8 271 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 GBP3Q9H0R5 595 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 FZD8Q9H461 694 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.65□□□□□ -0.38
CCM2-213ENST00000480658 HCSTQ9UBK5 93 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 SMC3Q9UQE7 1217 aa12.65□□□□□ -0.38
CCM2-213ENST00000480658 RBM19Q9Y4C8 960 aaKnown RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 TCF20Q9UGU0 1960 aaKnown RBP12.65□□□□□ -0.38
CCM2-213ENST00000480658 SPDYE4A6NLX3 237 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 HIDE1A8MVS5 230 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 ACKR2O00590 384 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 WNT7AO00755 349 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 PER2O15055 1255 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 CXCL14O95715 111 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 SOD2P04179 222 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 ADH1AP07327 375 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 PBX3P40426 434 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 MLH1P40692 756 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 AMHR2Q16671 573 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 SMG8Q8ND04 991 aaKnown RBP12.64□□□□□ -0.39
CCM2-213ENST00000480658 CDK5RAP3Q96JB5 506 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 TBC1D32Q96NH3 1257 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 BHMT2Q9H2M3 363 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 ADAM7Q9H2U9 754 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 SFXN1Q9H9B4 322 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 KIAA1024Q9UPX6 916 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 HCFC2Q9Y5Z7 792 aa12.64□□□□□ -0.39
CCM2-213ENST00000480658 SF3B1O75533 1304 aaKnown RBP eCLIP12.63□□□□□ -0.394e-7■■■■■ 133.7
CCM2-213ENST00000480658 NCOR1O75376 2440 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 LOC730098B7Z3J9 87 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 POMCP01189 267 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 PRKCBP05771 671 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 GJB2P29033 226 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 SLC11A1P49279 550 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 SMTNP53814 917 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 ATP2C1P98194 919 aaPredicted RBP12.63□□□□□ -0.39
CCM2-213ENST00000480658 DSC1Q08554 894 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 ELAVL2Q12926 359 aaKnown RBP12.63□□□□□ -0.39
CCM2-213ENST00000480658 PTPN14Q15678 1187 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 KIAA1841Q6NSI8 718 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 CABP7Q86V35 215 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 HDAC7Q8WUI4 952 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 CPB2Q96IY4 423 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 HERC2P3Q9BVR0 1158 aa12.63□□□□□ -0.39
CCM2-213ENST00000480658 RHOBTB2Q9BYZ6 727 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms