RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ACRBPQ8NEB7 543 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 NKD2Q969F2 451 aaPredicted RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 APIPQ96GX9 242 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ZC3H10Q96K80 434 aaKnown RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 FAM167AQ96KS9 214 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 SAMD11Q96NU1 681 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 WRNIP1Q96S55 665 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 TBCBQ99426 244 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 TACO1Q9BSH4 297 aaKnown RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 UBA5Q9GZZ9 404 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 PPCSQ9HAB8 311 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ATP6V0A4Q9HBG4 840 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 ZFP64Q9NPA5 681 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 TRMT13Q9NUP7 481 aaKnown RBP6.39□□□□□ -1.39
UPF3B-203ENST00000478840 RTEL1Q9NZ71 1219 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 PCDHA13Q9Y5I0 950 aa6.39□□□□□ -1.39
UPF3B-203ENST00000478840 CCDC189A1A4V9 331 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 CFAP69A5D8W1 941 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 FOXN3O00409 490 aaPredicted RBP6.38□□□□□ -1.39
UPF3B-203ENST00000478840 ARIH2O95376 493 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 PIK3CBP42338 1070 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 TRAPPC10P48553 1259 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 PRIM2P49643 509 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 CASP5P51878 434 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 ITGA1P56199 1179 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 CD69Q07108 199 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 STK3Q13188 491 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 NOMO1Q15155 1222 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 TARBP2Q15633 366 aaKnown RBP6.38□□□□□ -1.39
UPF3B-203ENST00000478840 MST1LQ2TV78 715 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 B3GNT8Q7Z7M8 397 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 OR2C3Q8N628 320 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 STPG3Q8N7X2 389 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 C3orf20Q8ND61 904 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 SNX33Q8WV41 574 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 ANKS1AQ92625 1134 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 MRGPRX4Q96LA9 322 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 HERPUD2Q9BSE4 406 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 APOL5Q9BWW9 433 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 LRRC27Q9C0I9 530 aa6.38□□□□□ -1.39
UPF3B-203ENST00000478840 SAE1Q9UBE0 346 aaPredicted RBP6.38□□□□□ -1.39
UPF3B-203ENST00000478840 A0A0G2JNJ9 132 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 N4BP3O15049 544 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 AKR1B10O60218 316 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 PPFIA4O75335 1185 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 FSBPO95073 299 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 GLI1P08151 1106 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 GAAP10253 952 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 PAX3P23760 479 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 SLC6A9P48067 706 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 GLRBP48167 497 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 LRP8Q14114 963 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 FGL2Q14314 439 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 RAB39AQ14964 217 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 RTP5Q14D33 572 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 DGKKQ5KSL6 1271 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 APBB1IPQ7Z5R6 666 aaPredicted RBP6.37□□□□□ -1.39
UPF3B-203ENST00000478840 SAPCD2Q86UD0 394 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 FAM129CQ86XR2 697 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 VPS37AQ8NEZ2 397 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 CYFIP2Q96F07 1278 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 WDR92Q96MX6 357 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 MANSC1Q9H8J5 431 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 CALCOCO1Q9P1Z2 691 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 Q9UFV3 132 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 SIK3Q9Y2K2 1263 aa6.37□□□□□ -1.39
UPF3B-203ENST00000478840 PHGDHO43175 533 aaKnown RBP6.36□□□□□ -1.39
UPF3B-203ENST00000478840 KNG1P01042 644 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 ATF2P15336 505 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 EIF4HQ15056 248 aaKnown RBP6.36□□□□□ -1.39
UPF3B-203ENST00000478840 WDR72Q3MJ13 1102 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 Q6ZVL8 140 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 CBLL1Q75N03 491 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 TAS1R1Q7RTX1 841 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 COL23A1Q86Y22 540 aaPredicted RBP6.36□□□□□ -1.39
UPF3B-203ENST00000478840 RHOT1Q8IXI2 618 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 LINC00482Q8N8I6 264 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 IL31RAQ8NI17 732 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 SMARCC2Q8TAQ2 1214 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 MTFMTQ96DP5 389 aaKnown RBP6.36□□□□□ -1.39
UPF3B-203ENST00000478840 RIPOR3Q96MK2 946 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 CLIC6Q96NY7 704 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 GORASP1Q9BQQ3 440 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 BCO1Q9HAY6 547 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 TDP1Q9NUW8 608 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 PCMTD2Q9NV79 361 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 TPCN1Q9ULQ1 816 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 PADI4Q9UM07 663 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 VWA7Q9Y334 891 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 PCDHA5Q9Y5H7 936 aa6.36□□□□□ -1.39
UPF3B-203ENST00000478840 RHPN2P1A8MT19 583 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 PEX10O60683 326 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 PAPLNO95428 1278 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 COL6A1P12109 1028 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 TYRP14679 529 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 IGFBP6P24592 240 aaPredicted RBP6.35□□□□□ -1.39
UPF3B-203ENST00000478840 ECHS1P30084 290 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 MC3RP41968 323 aa6.35□□□□□ -1.39
UPF3B-203ENST00000478840 TARDBPQ13148 414 aaKnown RBP eCLIP6.35□□□□□ -1.39
UPF3B-203ENST00000478840 UBE3CQ15386 1083 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms