RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 KIAA0391O15091 583 aaKnown RBP13.21□□□□□ -0.29
PTPRF-212ENST00000477970 SLC16A4O15374 487 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 ZMYND10O75800 440 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 RGS20O76081 388 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 GZMAP12544 262 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 MXI1P50539 228 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 PPP2R5EQ16537 467 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 FAM71AQ8IYT1 594 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 METTL13Q8N6R0 699 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 DNERQ8NFT8 737 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 MORC4Q8TE76 937 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 AMFRQ9UKV5 643 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 GOLGA6BA6NDN3 693 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 FOXN3O00409 490 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-212ENST00000477970 RNF40O75150 1001 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 ZC3H11AO75152 810 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRF-212ENST00000477970 ATG7O95352 703 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 ADSSP30520 456 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 CUL1Q13616 776 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 TMEM132BQ14DG7 1078 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 FAM102BQ5T8I3 360 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 ABHD15Q6UXT9 468 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 SLC35G2Q8TBE7 412 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 HOXC10Q9NYD6 342 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 AFG3L2Q9Y4W6 797 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 OTOFQ9HC10 1997 aa13.21□□□□□ -0.29
PTPRF-212ENST00000477970 GOLGA8KD6RF30 607 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 HEXIM1O94992 359 aaKnown RBP13.21□□□□□ -0.3
PTPRF-212ENST00000477970 GLI1P08151 1106 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 SNRNP35Q16560 246 aaKnown RBP13.21□□□□□ -0.3
PTPRF-212ENST00000477970 GNPTABQ3T906 1256 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 BRDTQ58F21 947 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-212ENST00000477970 KRT39Q6A163 491 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 ARHGEF19Q8IW93 802 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 CD302Q8IX05 232 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 CHST13Q8NET6 341 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 SEC14L1Q92503 715 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 CARD9Q9H257 536 aa13.21□□□□□ -0.3
PTPRF-212ENST00000477970 JPH1Q9HDC5 661 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-212ENST00000477970 PACSIN2Q9UNF0 486 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-212ENST00000477970 DDX3YO15523 660 aaKnown RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 ADRB2P07550 413 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 CLDN10P78369 228 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 SND1Q7KZF4 910 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 PARD3BQ8TEW8 1205 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 SHC3Q92529 594 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 PCIF1Q9H4Z3 704 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 UBE2TQ9NPD8 197 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 KMT5AQ9NQR1 393 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 SLC9A2Q9UBY0 812 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 ZNF862O60290 1169 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 OPA1O60313 960 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 CNGA1P29973 690 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 MATR3P43243 847 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 MFAP3P55082 362 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 SLC7A5Q01650 507 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 PLA2G4FQ68DD2 849 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 ENOSF1Q7L5Y1 443 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 DAAM2Q86T65 1068 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 GSPT2Q8IYD1 628 aaKnown RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 KRT12Q99456 494 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 KIAA1586Q9HCI6 787 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 GPRC5CQ9NQ84 441 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 GGA3Q9NZ52 723 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 TMOD4Q9NZQ9 345 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 ARHGAP28Q9P2N2 729 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 GABBR1Q9UBS5 961 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 NOCTQ9UK39 431 aaKnown RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 SCAF8Q9UPN6 1271 aaKnown RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 NOC2LQ9Y3T9 749 aaKnown RBP13.2□□□□□ -0.3
PTPRF-212ENST00000477970 STYXL1Q9Y6J8 313 aa13.2□□□□□ -0.3
PTPRF-212ENST00000477970 RTN2O75298 545 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 GGCXP38435 758 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 PLS1Q14651 629 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 MIS18BP1Q6P0N0 1132 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 MAEAQ7L5Y9 396 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 GOLGA6L1Q8N7Z2 621 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 ZKSCAN4Q969J2 545 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 ATP6V0A4Q9HBG4 840 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 TLL2Q9Y6L7 1015 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 DOCK5Q9H7D0 1870 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 MIF4GDA9UHW6 222 aaKnown RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 TISP43B9A030 160 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 BUB1BO60566 1050 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 PIGRP01833 764 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 GCLMP48507 274 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 HMGCS2P54868 508 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 FKBP1BP68106 108 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 ANGEL2Q5VTE6 544 aaKnown RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 NAP1L3Q99457 506 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 A1CFQ9NQ94 594 aaKnown RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 PPME1Q9Y570 386 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 DENND3A2RUS2 1198 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 SPDYE16A6NNV3 312 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-212ENST00000477970 ANKRD63C9JTQ0 380 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 RAD51CO43502 376 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 SUPT20HL2P0C7V6 817 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 CYP24A1Q07973 514 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 SUPT20HL1Q3ZLR7 823 aa13.19□□□□□ -0.3
PTPRF-212ENST00000477970 XKR3Q5GH77 459 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms