RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RAB21Q9UL25 225 aa15.65■□□□□ 0.1
HDAC6-220ENST00000477528 XPOTO43592 962 aaKnown RBP15.65■□□□□ 0.1
HDAC6-220ENST00000477528 CARSP49589 748 aaKnown RBP15.65■□□□□ 0.1
HDAC6-220ENST00000477528 RPS6P62753 249 aaKnown RBP15.65■□□□□ 0.1
HDAC6-220ENST00000477528 PLA2G4FQ68DD2 849 aa15.65■□□□□ 0.1
HDAC6-220ENST00000477528 MRPL4Q9BYD3 311 aaKnown RBP15.65■□□□□ 0.1
HDAC6-220ENST00000477528 CNOT7Q9UIV1 285 aaKnown RBP15.65■□□□□ 0.1
HDAC6-220ENST00000477528 TTI1O43156 1089 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 IRX5P78411 483 aaPredicted RBP15.64■□□□□ 0.09
HDAC6-220ENST00000477528 TMED2Q15363 201 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 ZNF699Q32M78 642 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 ZNF394Q53GI3 561 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 RHOT1Q8IXI2 618 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 KCTD6Q8NC69 237 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 RIN2Q8WYP3 895 aaPredicted RBP15.64■□□□□ 0.09
HDAC6-220ENST00000477528 MAP3K20Q9NYL2 800 aaKnown RBP15.64■□□□□ 0.09
HDAC6-220ENST00000477528 GTPBP10A4D1E9 387 aaKnown RBP15.64■□□□□ 0.09
HDAC6-220ENST00000477528 A6NJR5 290 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 PBX1P40424 430 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 YWHAGP61981 247 aaKnown RBP eCLIP15.64■□□□□ 0.09
HDAC6-220ENST00000477528 LRIG3Q6UXM1 1119 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 ZFPM1Q8IX07 1006 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 NKX2-3Q8TAU0 364 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 NLRP7Q8WX94 980 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 CALN1Q9BXU9 219 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 EHD2Q9NZN4 543 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 EXOC1LA0A1B0GW35 172 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 FAM86B1E9PN63 330 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 FAM86B2P0C5J1 330 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 PSMA2P25787 234 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 ZNF720Q7Z2F6 126 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 CERS5Q8N5B7 392 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 STMN2Q93045 179 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 TAAR1Q96RJ0 339 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 TMEM8AQ9HCN3 771 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 STRIP2Q9ULQ0 834 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 MYO1EQ12965 1108 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 KIAA1755Q5JYT7 1200 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 ATP2A3Q93084 1043 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 AIPL1Q9NZN9 384 aa15.64■□□□□ 0.09
HDAC6-220ENST00000477528 DISP2A7MBM2 1401 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 DPEP1P16444 411 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 SCP2P22307 547 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 SLC1A1P43005 524 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 ZNF568Q3ZCX4 644 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 ISCUQ9H1K1 167 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 ACTR5Q9H9F9 607 aaPredicted RBP15.63■□□□□ 0.09
HDAC6-220ENST00000477528 TBK1Q9UHD2 729 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 IP6K2Q9UHH9 426 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 NOD1Q9Y239 953 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 EFNA5P52803 228 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 HAS1Q92839 578 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 MCUR1Q96AQ8 359 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 LRRC4BQ9NT99 713 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 DNAJC17Q9NVM6 304 aaKnown RBP15.63■□□□□ 0.09
HDAC6-220ENST00000477528 SIK3Q9Y2K2 1263 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 RPS12P25398 132 aaKnown RBP15.63■□□□□ 0.09
HDAC6-220ENST00000477528 GPC3P51654 580 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 OR6B2Q6IFH4 312 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 CENPUQ71F23 418 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 SAMD3Q8N6K7 520 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 CCDC110Q8TBZ0 833 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 HEXIM2Q96MH2 286 aaKnown RBP15.63■□□□□ 0.09
HDAC6-220ENST00000477528 GOLPH3Q9H4A6 298 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 SYNPO2Q9UMS6 1093 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 PHF2O75151 1096 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 MMEP08473 750 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 NPEPPSP55786 919 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 COBLL1Q53SF7 1204 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 TMEM139Q8IV31 216 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 KCNMB3Q9NPA1 279 aa15.63■□□□□ 0.09
HDAC6-220ENST00000477528 CIB2O75838 187 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 INHBAP08476 426 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 GUCY2CP25092 1073 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 TNFAIP2Q03169 654 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 PDZD4Q76G19 769 aaPredicted RBP15.62■□□□□ 0.09
HDAC6-220ENST00000477528 GPRASP2Q96D09 838 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 MED10Q9BTT4 135 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 PACSIN1Q9BY11 444 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 C17orf75Q9HAS0 396 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 ALG6Q9Y672 507 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 COMMD10Q9Y6G5 202 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 GMNCA6NCL1 334 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 CAPN9O14815 690 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 MAGEA9P43362 315 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 LMBRD2Q68DH5 695 aaPredicted RBP15.62■□□□□ 0.09
HDAC6-220ENST00000477528 ARHGAP24Q8N264 748 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 PPFIBP2Q8ND30 876 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 RBM46Q8TBY0 533 aaKnown RBP15.62■□□□□ 0.09
HDAC6-220ENST00000477528 CASZ1Q86V15 1759 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 PRPSAP2O60256 369 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 SLC12A3P55017 1021 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 ADCY1Q08828 1119 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 MYBPC2Q14324 1141 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 BSPRYQ5W0U4 402 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 ZNF571Q7Z3V5 609 aaPredicted RBP15.62■□□□□ 0.09
HDAC6-220ENST00000477528 SESTD1Q86VW0 696 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 CYP2W1Q8TAV3 490 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 ATG4CQ96DT6 458 aa15.62■□□□□ 0.09
HDAC6-220ENST00000477528 RAB3IPQ96QF0 476 aaPredicted RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms