RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NEK4P51957 841 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RNASELQ05823 741 aaKnown RBP13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CAPSQ13938 189 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CES5AQ6NT32 575 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KANK3Q6NY19 840 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ALYREFQ86V81 257 aaKnown RBP13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 C12orf76Q8N812 135 aaPredicted RBP13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PRSS33Q8NF86 280 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 URGCPQ8TCY9 931 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ASAP3Q8TDY4 903 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KLHL5Q96PQ7 755 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CSRNP2Q9H175 543 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TMEM60Q9H2L4 133 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 BRMS1Q9HCU9 246 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MARCH5Q9NX47 278 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 USTQ9Y2C2 406 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FAN1Q9Y2M0 1017 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ARL5CA6NH57 179 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CNPP09543 421 aaKnown RBP13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ARF4P18085 180 aaPredicted RBP13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NOTUMQ6P988 496 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TAS1R1Q7RTX1 841 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PPFIBP1Q86W92 1011 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ZDHHC14Q8IZN3 488 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PIGOQ8TEQ8 1089 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CPB2Q96IY4 423 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RIPOR3Q96MK2 946 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GBP3Q9H0R5 595 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MYO15AQ9UKN7 3530 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 DOCK8Q8NF50 2099 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PLXNA3P51805 1871 aa13.63□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 DMDP11532 3685 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 A0A087WWV3 80 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUA9 196 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NEMFO60524 1076 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ERLIN2O94905 339 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 POMCP01189 267 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SOD2P04179 222 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 WEE2P0C1S8 567 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ITGA4P13612 1032 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TXKP42681 527 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MRE11P49959 708 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TCF15Q12870 199 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ATAT1Q5SQI0 421 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RARS2Q5T160 578 aaKnown RBP13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KIAA0319Q5VV43 1072 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GPR149Q86SP6 731 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CATSPER3Q86XQ3 398 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GPR65Q8IYL9 337 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KREMEN2Q8NCW0 462 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GAD1Q99259 594 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RHOBTB2Q9BYZ6 727 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RXFP1Q9HBX9 757 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CHST7Q9NS84 486 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 DBR1Q9UK59 544 aaKnown RBP13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SORCS3Q9UPU3 1222 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GIT1Q9Y2X7 761 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 HES2Q9Y543 173 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 DOCK6Q96HP0 2047 aa13.62□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ZMYM2Q9UBW7 1377 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 POTEMA6NI47 508 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MED24O75448 989 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 BRD1O95696 1058 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 C1RP00736 705 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TFDP1Q14186 410 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FAM187BQ17R55 369 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CDCA2Q69YH5 1023 aaPredicted RBP13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PPP4R3CPQ6ZMV5 832 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 UBALD2Q8IYN6 164 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CMASQ8NFW8 434 aaPredicted RBP13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ZFP42Q96MM3 310 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 RPS6KC1Q96S38 1066 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PRRX2Q99811 253 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 POLR3CQ9BUI4 534 aaPredicted RBP13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 HERC2P3Q9BVR0 1158 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FZD8Q9H461 694 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TUFT1Q9NNX1 390 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 TRIP11Q15643 1979 aa13.61□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 F8W810 466 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 INO80B-WBP1J3KQ70 363 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 B4GALT5O43286 388 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PDGFBP01127 241 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SP100P23497 879 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 AVPR2P30518 371 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MLH1P40692 756 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SCNN1GP51170 649 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 VCPP55072 806 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 DSG1Q02413 1049 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 ORC2Q13416 577 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 C15orf39Q6ZRI6 1047 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CABP7Q86V35 215 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 PLCD3Q8N3E9 789 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 C4orf32Q8N8J7 132 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 FAM193BQ96PV7 902 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 KIF2CQ99661 725 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 EMILIN2Q9BXX0 1053 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 POLR3FQ9H1D9 316 aaPredicted RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NXF3Q9H4D5 531 aaKnown RBP13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SFXN1Q9H9B4 322 aa13.6□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GPRC5CQ9NQ84 441 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms