RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ARL5CA6NH57 179 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 LOC730098B7Z3J9 87 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 F8W810 466 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 CTSAP10619 480 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 MLH1P40692 756 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 RNASELQ05823 741 aaKnown RBP15.64■□□□□ 0.09
UPF3A-204ENST00000475218 DSC1Q08554 894 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 MCPH1Q8NEM0 835 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 GAD1Q99259 594 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 MMTAG2Q9BU76 263 aaKnown RBP15.64■□□□□ 0.09
UPF3A-204ENST00000475218 CCDC113Q9H0I3 377 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 FZD8Q9H461 694 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.64■□□□□ 0.09
UPF3A-204ENST00000475218 NOL7Q9UMY1 257 aaKnown RBP15.64■□□□□ 0.09
UPF3A-204ENST00000475218 IRAK3Q9Y616 596 aa15.64■□□□□ 0.09
UPF3A-204ENST00000475218 TDRD15B5MCY1 1934 aaKnown RBP15.63■□□□□ 0.09
UPF3A-204ENST00000475218 LRRIQ4A6NIV6 560 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 ST18O60284 1047 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 CXCL14O95715 111 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 ITGA4P13612 1032 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 GNL2Q13823 731 aaKnown RBP15.63■□□□□ 0.09
UPF3A-204ENST00000475218 TMEM31Q5JXX7 168 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 PPP4R3CPQ6ZMV5 832 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 COLGALT2Q8IYK4 626 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 CNNM3Q8NE01 707 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 URGCPQ8TCY9 931 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 CCDC43Q96MW1 224 aaKnown RBP15.63■□□□□ 0.09
UPF3A-204ENST00000475218 APOL5Q9BWW9 433 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 CXCL16Q9H2A7 254 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 LRWD1Q9UFC0 647 aa15.63■□□□□ 0.09
UPF3A-204ENST00000475218 NRP1O14786 923 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 DCXO43602 365 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 LILRB3O75022 631 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 MUTP22033 750 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 AKAP5P24588 427 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 GJB2P29033 226 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 CDC25AP30304 524 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 CCT6AP40227 531 aaKnown RBP15.62■□□□□ 0.09
UPF3A-204ENST00000475218 SCNN1GP51170 649 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 PDIA5Q14554 519 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 CBX2Q14781 532 aaPredicted RBP15.62■□□□□ 0.09
UPF3A-204ENST00000475218 FAM187BQ17R55 369 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 TAS1R1Q7RTX1 841 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 KCNK18Q7Z418 384 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 RNF135Q8IUD6 432 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 RNF168Q8IYW5 571 aaPredicted RBP15.62■□□□□ 0.09
UPF3A-204ENST00000475218 ERMNQ8TAM6 284 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 SLC22A17Q8WUG5 538 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 TMEM175Q9BSA9 504 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 MUTYHQ9UIF7 546 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 FSD2A1L4K1 749 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 ARHGEF35A5YM69 484 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 NPTXRO95502 500 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 PTPN14Q15678 1187 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 KANK3Q6NY19 840 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 SLC27A1Q6PCB7 646 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 KIFC3Q9BVG8 833 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 APOL6Q9BWW8 343 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 BHMT2Q9H2M3 363 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 DDX19AQ9NUU7 478 aaKnown RBP15.62■□□□□ 0.09
UPF3A-204ENST00000475218 KANSL3Q9P2N6 904 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 KIAA1024Q9UPX6 916 aa15.62■□□□□ 0.09
UPF3A-204ENST00000475218 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.61■□□□□ 0.09
UPF3A-204ENST00000475218 EPCAMP16422 314 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 HAUS3Q68CZ6 603 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 DAW1Q8N136 415 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 POP1Q99575 1024 aaKnown RBP15.61■□□□□ 0.09
UPF3A-204ENST00000475218 PHF7Q9BWX1 381 aaPredicted RBP15.61■□□□□ 0.09
UPF3A-204ENST00000475218 PDZD7Q9H5P4 517 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 UBN1Q9NPG3 1134 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 CACNG4Q9UBN1 327 aa15.61■□□□□ 0.09
UPF3A-204ENST00000475218 E9PMD0 336 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 PRPHP41219 470 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 NAMPTP43490 491 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 HERC4Q5GLZ8 1057 aaPredicted RBP15.6■□□□□ 0.09
UPF3A-204ENST00000475218 EEF1DP3Q658K8 133 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 SNX29Q8TEQ0 813 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 PRMT7Q9NVM4 692 aaPredicted RBP15.6■□□□□ 0.09
UPF3A-204ENST00000475218 KLK14Q9P0G3 267 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 FAN1Q9Y2M0 1017 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 GIT1Q9Y2X7 761 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 PRG3Q9Y2Y8 225 aaPredicted RBP15.6■□□□□ 0.09
UPF3A-204ENST00000475218 TECTAO75443 2155 aa15.6■□□□□ 0.09
UPF3A-204ENST00000475218 ALDH2P05091 517 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 ALADP13716 330 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 HOXB8P17481 243 aaPredicted RBP15.59■□□□□ 0.09
UPF3A-204ENST00000475218 ATP2C1P98194 919 aaPredicted RBP15.59■□□□□ 0.09
UPF3A-204ENST00000475218 MAPK7Q13164 816 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 MCTP1Q6DN14 999 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 C12orf76Q8N812 135 aaPredicted RBP15.59■□□□□ 0.09
UPF3A-204ENST00000475218 CASP10Q92851 521 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 PRIMPOLQ96LW4 560 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 PLXNA3P51805 1871 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 CARNS1A5YM72 827 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 LAD1O00515 517 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 CNPP09543 421 aaKnown RBP15.59■□□□□ 0.09
UPF3A-204ENST00000475218 NCBP1Q09161 790 aaKnown RBP15.59■□□□□ 0.09
UPF3A-204ENST00000475218 NT5DC1Q5TFE4 455 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 RABGGTAQ92696 567 aa15.59■□□□□ 0.09
UPF3A-204ENST00000475218 PNMA5Q96PV4 448 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms