RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 DSC1Q08554 894 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 PTGDRQ13258 359 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 PADI6Q6TGC4 694 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 PPP4R3CPQ6ZMV5 832 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 COLGALT2Q8IYK4 626 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 IGSF22Q8N9C0 903 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 MCPH1Q8NEM0 835 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 URGCPQ8TCY9 931 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 ZFP42Q96MM3 310 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 CCDC43Q96MW1 224 aaKnown RBP20.59■□□□□ 0.89
COL7A1-209ENST00000474432 GAD1Q99259 594 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 TMEM175Q9BSA9 504 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 FZD8Q9H461 694 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 NXF3Q9H4D5 531 aaKnown RBP20.59■□□□□ 0.89
COL7A1-209ENST00000474432 MARCH5Q9NX47 278 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 KANSL3Q9P2N6 904 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 CDH22Q9UJ99 828 aa20.59■□□□□ 0.89
COL7A1-209ENST00000474432 TECTAO75443 2155 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 CARNS1A5YM72 827 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 ARL5CA6NH57 179 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 NRP1O14786 923 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 LILRB3O75022 631 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 EDN1P05305 212 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 MUTP22033 750 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 GNL2Q13823 731 aaKnown RBP20.58■□□□□ 0.89
COL7A1-209ENST00000474432 PDIA5Q14554 519 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 HERC4Q5GLZ8 1057 aaPredicted RBP20.58■□□□□ 0.89
COL7A1-209ENST00000474432 ERMNQ8TAM6 284 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 SLC22A17Q8WUG5 538 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 APOL5Q9BWW9 433 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 PHF7Q9BWX1 381 aaPredicted RBP20.58■□□□□ 0.89
COL7A1-209ENST00000474432 POLD4Q9HCU8 107 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 UBN1Q9NPG3 1134 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.58■□□□□ 0.89
COL7A1-209ENST00000474432 MUTYHQ9UIF7 546 aa20.58■□□□□ 0.89
COL7A1-209ENST00000474432 NOL7Q9UMY1 257 aaKnown RBP20.58■□□□□ 0.89
COL7A1-209ENST00000474432 LRRIQ4A6NIV6 560 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 ALDH2P05091 517 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 MLH1P40692 756 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 PTPN14Q15678 1187 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 FAM187BQ17R55 369 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 RNF168Q8IYW5 571 aaPredicted RBP20.57■□□□□ 0.88
COL7A1-209ENST00000474432 FEZF2Q8TBJ5 459 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 CCDC113Q9H0I3 377 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 LRWD1Q9UFC0 647 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 USP20Q9Y2K6 914 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 FAN1Q9Y2M0 1017 aa20.57■□□□□ 0.88
COL7A1-209ENST00000474432 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-209ENST00000474432 ARHGEF35A5YM69 484 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 PP2D1A8MPX8 630 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 F8W810 466 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 NPTXRO95502 500 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 HOXB8P17481 243 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-209ENST00000474432 CCT6AP40227 531 aaKnown RBP20.56■□□□□ 0.88
COL7A1-209ENST00000474432 SCNN1GP51170 649 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 SLC27A1Q6PCB7 646 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 CASP10Q92851 521 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 MMTAG2Q9BU76 263 aaKnown RBP20.56■□□□□ 0.88
COL7A1-209ENST00000474432 APOL6Q9BWW8 343 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 KIAA1024Q9UPX6 916 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 GIT1Q9Y2X7 761 aa20.56■□□□□ 0.88
COL7A1-209ENST00000474432 PRR33A8MZF0 331 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 ST18O60284 1047 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 EPCAMP16422 314 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 AKAP5P24588 427 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 NCBP1Q09161 790 aaKnown RBP20.55■□□□□ 0.88
COL7A1-209ENST00000474432 HAUS3Q68CZ6 603 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 KANK3Q6NY19 840 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 TAS1R1Q7RTX1 841 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 PRIMPOLQ96LW4 560 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 TBC1D32Q96NH3 1257 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 BHMT2Q9H2M3 363 aa20.55■□□□□ 0.88
COL7A1-209ENST00000474432 PRMT7Q9NVM4 692 aaPredicted RBP20.55■□□□□ 0.88
COL7A1-209ENST00000474432 SRGAP2BP0DMP2 458 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 CDC25AP30304 524 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 PRPHP41219 470 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 NAMPTP43490 491 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 GIT2Q14161 759 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 KCNK18Q7Z418 384 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 C12orf76Q8N812 135 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-209ENST00000474432 RPGRIP1Q96KN7 1286 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 KLHL5Q96PQ7 755 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 FAM193BQ96PV7 902 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-209ENST00000474432 CXCL16Q9H2A7 254 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 ADAM7Q9H2U9 754 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 PDZD7Q9H5P4 517 aa20.54■□□□□ 0.88
COL7A1-209ENST00000474432 DDX19AQ9NUU7 478 aaKnown RBP20.54■□□□□ 0.88
COL7A1-209ENST00000474432 PRG3Q9Y2Y8 225 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-209ENST00000474432 E9PMD0 336 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 CNPP09543 421 aaKnown RBP20.53■□□□□ 0.88
COL7A1-209ENST00000474432 GJB2P29033 226 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 EEF1DP3Q658K8 133 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 DAW1Q8N136 415 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 SNX29Q8TEQ0 813 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 KIFC3Q9BVG8 833 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 TRIM6Q9C030 488 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-209ENST00000474432 KLK14Q9P0G3 267 aa20.53■□□□□ 0.88
COL7A1-209ENST00000474432 PLXNA3P51805 1871 aa20.52■□□□□ 0.88
COL7A1-209ENST00000474432 ZMYM2Q9UBW7 1377 aa20.52■□□□□ 0.88
COL7A1-209ENST00000474432 LAD1O00515 517 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms