RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 C1orf220Q5T0J3 134 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 RHOT2Q8IXI1 618 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 PARP9Q8IXQ6 854 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 PRELID2Q8N945 189 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 PGM2Q96G03 612 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 ZNF317Q96PQ6 595 aaPredicted RBP22.74■■□□□ 1.23
COL18A1-207ENST00000473212 NACC1Q96RE7 527 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 ADAM7Q9H2U9 754 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 SEMA4AQ9H3S1 761 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 LOC102724159A0A0B4J2E5 919 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 GOLGA8IPA6NC78 632 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 GOLGA8JA6NMD2 632 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 CCDC169A6NNP5 214 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 RGS16O15492 202 aaPredicted RBP22.74■■□□□ 1.23
COL18A1-207ENST00000473212 CALCAP01258 141 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 MMP13P45452 471 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 RPL21P46778 160 aaKnown RBP22.74■■□□□ 1.23
COL18A1-207ENST00000473212 PWP2Q15269 919 aaKnown RBP22.74■■□□□ 1.23
COL18A1-207ENST00000473212 TTC27Q6P3X3 843 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 MIGA2Q7L4E1 593 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 SERPINA10Q9UK55 444 aa22.74■■□□□ 1.23
COL18A1-207ENST00000473212 ARHGEF35A5YM69 484 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 YDJCA8MPS7 323 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 DRG2P55039 364 aaKnown RBP22.73■■□□□ 1.23
COL18A1-207ENST00000473212 PADI6Q6TGC4 694 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 RPUSD2Q8IZ73 545 aaKnown RBP22.73■■□□□ 1.23
COL18A1-207ENST00000473212 ATXN2LQ8WWM7 1075 aaKnown RBP22.73■■□□□ 1.23
COL18A1-207ENST00000473212 GPRC5CQ9NQ84 441 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 COL20A1Q9P218 1284 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 SYNGAP1Q96PV0 1343 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 SGPL1O95470 568 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 PDE6BP35913 854 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 FMNL3Q8IVF7 1028 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 NLGN1Q8N2Q7 840 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 UBL4BQ8N7F7 174 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 CCDC197Q8NCU1 140 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 SGSM3Q96HU1 749 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 STRA6Q9BX79 667 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 KDM4CQ9H3R0 1056 aa22.73■■□□□ 1.23
COL18A1-207ENST00000473212 ANKRD63C9JTQ0 380 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 VIL1P09327 827 aaKnown RBP22.72■■□□□ 1.23
COL18A1-207ENST00000473212 CHRNA3P32297 505 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 MESDQ14696 234 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 SNCBQ16143 134 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 AGBL1Q96MI9 1066 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 WDR11Q9BZH6 1224 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.72■■□□□ 1.23
COL18A1-207ENST00000473212 SLCO1A2P46721 670 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 CLUL1Q15846 466 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 STXBP4Q6ZWJ1 553 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 KCTD17Q8N5Z5 321 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 ZSWIM1Q9BR11 485 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 MRIQ9BWK5 157 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 SEL1LQ9UBV2 794 aa22.72■■□□□ 1.23
COL18A1-207ENST00000473212 ATRNL1Q5VV63 1379 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 FGFR4P22455 802 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 SPP2Q13103 211 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 C11orf63Q6NUN7 778 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 CCDC137Q6PK04 289 aaKnown RBP22.71■■□□□ 1.23
COL18A1-207ENST00000473212 B3GNT9Q6UX72 402 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 FAM228AQ86W67 206 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 EPS8L3Q8TE67 593 aaKnown RBP22.71■■□□□ 1.23
COL18A1-207ENST00000473212 ZNF646O15015 1829 aaPredicted RBP22.71■■□□□ 1.23
COL18A1-207ENST00000473212 UBE4BO95155 1302 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 CCT8L1PA6NM43 557 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 MIF4GDA9UHW6 222 aaKnown RBP22.71■■□□□ 1.23
COL18A1-207ENST00000473212 BCRP11274 1271 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 LRRC34Q8IZ02 419 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 P3H4Q92791 437 aa22.71■■□□□ 1.23
COL18A1-207ENST00000473212 IBSPP21815 317 aaPredicted RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 COMTP21964 271 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 CTNNA2P26232 953 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 KCNJ1P48048 391 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 HADHBP55084 474 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 XRCC4Q13426 336 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 DGKZQ13574 1117 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 NSMFQ6X4W1 530 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 NOP9Q86U38 636 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 LDHDQ86WU2 507 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 POP1Q99575 1024 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 PRMT1Q99873 361 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 TEKT3Q9BXF9 490 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 MTFR1LQ9H019 292 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 INTS9Q9NV88 658 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 PCYOX1Q9UHG3 505 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 ODF2LQ9ULJ1 636 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 TPX2Q9ULW0 747 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 TMX2Q9Y320 296 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 CHRNB2P17787 502 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 VAMP7P51809 220 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 GPC5P78333 572 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 SLC47A2Q86VL8 602 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 SCLT1Q96NL6 688 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 MTRF1LQ9UGC7 380 aaKnown RBP22.7■■□□□ 1.22
COL18A1-207ENST00000473212 TRPC6Q9Y210 931 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 PTPN22Q9Y2R2 807 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 PCDHA3Q9Y5H8 950 aa22.7■■□□□ 1.22
COL18A1-207ENST00000473212 NFIBO00712 420 aa22.69■■□□□ 1.22
COL18A1-207ENST00000473212 GHRP10912 638 aa22.69■■□□□ 1.22
COL18A1-207ENST00000473212 PYGMP11217 842 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms