RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044		Q6ZVL8	140 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	MSL3	Q8N5Y2	521 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	OR2I1P	Q8NGU4	316 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	RABGGTA	Q92696	567 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	HDAC10	Q969S8	669 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	RUNDC1	Q96C34	613 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	CCDC136	Q96JN2	1154 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	BCO1	Q9HAY6	547 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	INTU	Q9ULD6	942 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	FAM184B	Q9ULE4	1060 aa		4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	RBM8A	Q9Y5S9	174 aa	Known RBP	4.99	□□□□□ -1.61
PTCD3-209	ENST00000472044	SGTA	O43765	313 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	B4GALT3	O60512	393 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	DTNB	O60941	627 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	TOX4	O94842	621 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	SEPT2	Q15019	361 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	NOMO1	Q15155	1222 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	RNF151	Q2KHN1	245 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	PPP4R3A	Q6IN85	833 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	BORA	Q6PGQ7	559 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	NOL8	Q76FK4	1167 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	MIGA2	Q7L4E1	593 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	CATIP	Q7Z7H3	387 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	SP8	Q8IXZ3	490 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	LGI4	Q8N135	537 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	LILRA3	Q8N6C8	439 aa	Predicted RBP	4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZNF480	Q8WV37	535 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	CFHR4	Q92496	578 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	C1GALT1C1	Q96EU7	318 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	CYFIP2	Q96F07	1278 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	TAAR9	Q96RI9	348 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	SEC61A2	Q9H9S3	476 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	PRDM11	Q9NQV5	511 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	ING3	Q9NXR8	418 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	TRPS1	Q9UHF7	1281 aa		4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	CFAP20	Q9Y6A4	193 aa	Known RBP	4.98	□□□□□ -1.61
PTCD3-209	ENST00000472044	NRP1	O14786	923 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	AP1G1	O43747	822 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	B4GALT4	O60513	344 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	PRAMEF4	O60810	478 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	RPLP2	P05387	115 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	GYPE	P15421	78 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	ECHS1	P30084	290 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	SLC6A9	P48067	706 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	TBX4	P57082	545 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	BPIFB4	P59827	614 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	ATP2C1	P98194	919 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	GBX1	Q14549	363 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	SURF1	Q15526	300 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	PGS1	Q32NB8	556 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	C3orf36	Q3SXR2	165 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZNF568	Q3ZCX4	644 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	NT5DC1	Q5TFE4	455 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	PLEKHH3	Q7Z736	793 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	DGKH	Q86XP1	1220 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	SIAH1	Q8IUQ4	282 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	MARCH10	Q8NA82	808 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	OR7D4	Q8NG98	312 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	DIS3L	Q8TF46	1054 aa	Known RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	DPF2	Q92785	391 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	MVB12A	Q96EY5	273 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	MAP3K14	Q99558	947 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	C7orf25	Q9BPX7	421 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	KRTAP9-9	Q9BYP9	154 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	KRTAP9-4	Q9BYQ2	154 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	ENKD1	Q9H0I2	346 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	MANSC1	Q9H8J5	431 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	TLR9	Q9NR96	1032 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	C1orf112	Q9NSG2	853 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	OBP2A	Q9NY56	170 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	GPRC5D	Q9NZD1	345 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	RCAN3	Q9UKA8	241 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	SIK3	Q9Y2K2	1263 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	NR2E1	Q9Y466	385 aa		4.97	□□□□□ -1.61
PTCD3-209	ENST00000472044	VSTM5	A8MXK1	200 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044		H3BML4	177 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	MATN2	O00339	956 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	SLC26A4	O43511	780 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	PRC1	O43663	620 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	TRIM13	O60858	407 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	CNOT4	O95628	575 aa	Known RBP	4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	ADSL	P30566	484 aa	Predicted RBP	4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	SREBF1	P36956	1147 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	GNAL	P38405	381 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	PPP2CB	P62714	309 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	PPP2CA	P67775	309 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	DSC2	Q02487	901 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZNF267	Q14586	743 aa	Predicted RBP	4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	KRTAP19-4	Q3LI73	84 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	TTC7B	Q86TV6	843 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	CMTM4	Q8IZR5	234 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	ANKRD53	Q8N9V6	530 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	GPHA2	Q96T91	129 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	PUF60	Q9UHX1	559 aa	Known RBP	4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	PCDHB1	Q9Y5F3	818 aa		4.96	□□□□□ -1.62
PTCD3-209	ENST00000472044	SLC16A6	O15403	523 aa		4.95	□□□□□ -1.62

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