RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZXDAP98168 799 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 PTPN14Q15678 1187 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 AMHR2Q16671 573 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 CATSPER3Q86XQ3 398 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 NECTIN4Q96NY8 510 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 POLR3CQ9BUI4 534 aaPredicted RBP18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 DBR1Q9UK59 544 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 TECTAO75443 2155 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 NRP1O14786 923 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 MED24O75448 989 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 OR52Z1P0C646 297 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 ARF4P18085 180 aaPredicted RBP18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 MTHFRP42898 656 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 ZNF174Q15697 407 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 TRIM67Q6ZTA4 783 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 BMP8AQ7Z5Y6 402 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 PPFIBP1Q86W92 1011 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 HACE1Q8IYU2 909 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 MCPH1Q8NEM0 835 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 FBXO18Q8NFZ0 1043 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 SLC22A17Q8WUG5 538 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 MFSD14AQ96MC6 490 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 NACC1Q96RE7 527 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 GAD1Q99259 594 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 RNF39Q9H2S5 420 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 SH2B1Q9NRF2 756 aaPredicted RBP18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 NR2E1Q9Y466 385 aa18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 TDRD15B5MCY1 1934 aaKnown RBP18.39■□□□□ 0.53
CCDC28B-204ENST00000469003 TMEM221A6NGB7 291 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 ARL5CA6NH57 179 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 M0R296 226 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 EPCAMP16422 314 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 RPA1P27694 616 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 RARS2Q5T160 578 aaKnown RBP18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 COLGALT2Q8IYK4 626 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 ERMNQ8TAM6 284 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 RIPOR3Q96MK2 946 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 KIF2CQ99661 725 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 TRIM6Q9C030 488 aaPredicted RBP18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 POMKQ9H5K3 350 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 CDH22Q9UJ99 828 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 GIT1Q9Y2X7 761 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 HES2Q9Y543 173 aa18.38■□□□□ 0.53
CCDC28B-204ENST00000469003 LRRIQ4A6NIV6 560 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 B4GALT5O43286 388 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 MLH1P40692 756 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 TRAPPC10P48553 1259 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 RBM25P49756 843 aaKnown RBP18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 DSC1Q08554 894 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 TTC38Q5R3I4 469 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 SLC27A1Q6PCB7 646 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 MAEAQ7L5Y9 396 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 NOSTRINQ8IVI9 506 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 C12orf76Q8N812 135 aaPredicted RBP18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 FAM184AQ8NB25 1140 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 KLHL5Q96PQ7 755 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 EMILIN2Q9BXX0 1053 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 NXF3Q9H4D5 531 aaKnown RBP18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 GPRC5CQ9NQ84 441 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 MARCH5Q9NX47 278 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 MIOSQ9NXC5 875 aa18.37■□□□□ 0.53
CCDC28B-204ENST00000469003 A0A1B0GUA9 196 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 LILRB3O75022 631 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 SOD2P04179 222 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 SSBP05455 408 aaKnown RBP eCLIP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 MUTP22033 750 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 SP100P23497 879 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 OR1G1P47890 313 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 SCNN1GP51170 649 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 SIGLEC14Q08ET2 396 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 GNL2Q13823 731 aaKnown RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 PTPN21Q16825 1174 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 C8orf34Q49A92 452 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 CDCA2Q69YH5 1023 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 KIAA1841Q6NSI8 718 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 POTEGQ6S5H5 508 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 PRIMPOLQ96LW4 560 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 ZFP42Q96MM3 310 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 HERC2P3Q9BVR0 1158 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 APOL6Q9BWW8 343 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 TSHZ2Q9NRE2 1034 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 MRPL17Q9NRX2 175 aaKnown RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 PRMT7Q9NVM4 692 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 ZMYM2Q9UBW7 1377 aa18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 PRG3Q9Y2Y8 225 aaPredicted RBP18.36■□□□□ 0.53
CCDC28B-204ENST00000469003 NPTXRO95502 500 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 EFEMP2O95967 443 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 URODP06132 367 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 CNPP09543 421 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 KLRC2P26717 231 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 CLCN4P51793 760 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 FAM187BQ17R55 369 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 ATAT1Q5SQI0 421 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 PADI6Q6TGC4 694 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 CABP7Q86V35 215 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 CDR2LQ86X02 465 aaPredicted RBP18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 ZBTB8OSQ8IWT0 167 aa18.35■□□□□ 0.53
CCDC28B-204ENST00000469003 RNF168Q8IYW5 571 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms