RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	FAM205C	A6NFA0	338 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	TBX3	O15119	743 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	TEX28	O15482	410 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	NARS	O43776	548 aa	Known RBP	12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	DTNB	O60941	627 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	REC8	O95072	547 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	CTDNEP1	O95476	244 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	SSB	P05455	408 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	SRGAP2C	P0DJJ0	459 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	YWHAB	P31946	246 aa	Known RBP	12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	TDG	Q13569	410 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	EPHA7	Q15375	998 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	OTOP3	Q7RTS5	596 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	NEK8	Q86SG6	692 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	POTED	Q86YR6	584 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	RNF149	Q8NC42	400 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	URGCP	Q8TCY9	931 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	EMILIN2	Q9BXX0	1053 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	MAN1C1	Q9NR34	630 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	CHST7	Q9NS84	486 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	KANSL3	Q9P2N6	904 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	FAN1	Q9Y2M0	1017 aa		12.47	□□□□□ -0.41
PTPN7-204	ENST00000462815	RIF1	Q5UIP0	2472 aa	Known RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	ARL5C	A6NH57	179 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	GAS2	O43903	313 aa	Known RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	ALDH2	P05091	517 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	GCFC2	P16383	781 aa	Known RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	KLRC2	P26717	231 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	MLH1	P40692	756 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	PTEN	P60484	403 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	DSG1	Q02413	1049 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	MBTD1	Q05BQ5	628 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	STK3	Q13188	491 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	FRMD5	Q7Z6J6	570 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	CCDC105	Q8IYK2	499 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	ASAP3	Q8TDY4	903 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	DYDC2	Q96IM9	177 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	ZFP42	Q96MM3	310 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	WDR6	Q9NNW5	1121 aa	Known RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	MRPL17	Q9NRX2	175 aa	Known RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	EPS15L1	Q9UBC2	864 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	PRG3	Q9Y2Y8	225 aa	Predicted RBP	12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	HES2	Q9Y543	173 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	CYP46A1	Q9Y6A2	500 aa		12.46	□□□□□ -0.41
PTPN7-204	ENST00000462815	DOCK8	Q8NF50	2099 aa		12.46	□□□□□ -0.42
PTPN7-204	ENST00000462815	CLUH	O75153	1309 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	KRBA1	A5PL33	1030 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	WNT7A	O00755	349 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CPLX1	O14810	134 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	ASAP2	O43150	1006 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	DKC1	O60832	514 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	RFPL2	O75678	378 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	SLITRK3	O94933	977 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	LYPLA2	O95372	231 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	C1R	P00736	705 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	SCNN1G	P51170	649 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	POU5F1B	Q06416	359 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CAPS	Q13938	189 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CTTN	Q14247	550 aa	Known RBP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	PCBP1	Q15365	356 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	LILRA6	Q6PI73	481 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	PIK3AP1	Q6ZUJ8	805 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	EXOC8	Q8IYI6	725 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CNNM3	Q8NE01	707 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	RSAD2	Q8WXG1	361 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	ACSF2	Q96CM8	615 aa	Predicted RBP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CCDC51	Q96ER9	411 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CPB2	Q96IY4	423 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	MYADM	Q96S97	322 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	GAD1	Q99259	594 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	HSD17B14	Q9BPX1	270 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	CSRNP2	Q9H175	543 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	NXF3	Q9H4D5	531 aa	Known RBP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	UBN1	Q9NPG3	1134 aa		12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	TDRD15	B5MCY1	1934 aa	Known RBP	12.45	□□□□□ -0.42
PTPN7-204	ENST00000462815	ZMYM2	Q9UBW7	1377 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	CCDC195	A0A1B0GUA6	201 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	CCDC194	A0A1B0GVG4	234 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	C2CD2L	O14523	706 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	CCNT1	O60563	726 aa	Known RBP	12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	UROD	P06132	367 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	ITGA4	P13612	1032 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	FDPS	P14324	419 aa	Known RBP	12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	ARF4	P18085	180 aa	Predicted RBP	12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	AXL	P30530	894 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	ARL2	P36404	184 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	GLUD2	P49448	558 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	CYP4A11	Q02928	519 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	NCAPH2	Q6IBW4	605 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	CYP26C1	Q6V0L0	522 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	GPR65	Q8IYL9	337 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	SIX5	Q8N196	739 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	TMEM87A	Q8NBN3	555 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	FLCN	Q8NFG4	579 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	TCP11	Q8WWU5	503 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	B3GALT6	Q96L58	329 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	MTR	Q99707	1265 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	NFKBIZ	Q9BYH8	718 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	GPR62	Q9BZJ7	368 aa		12.44	□□□□□ -0.42

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