RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ASIC3Q9UHC3 531 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 INTUQ9ULD6 942 aa12.57□□□□□ -0.4
CPSF3-202ENST00000460593 CLDN3O15551 220 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 FERP16591 822 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 SP100P23497 879 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 COILP38432 576 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 GIT2Q14161 759 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 APBB1IPQ7Z5R6 666 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 FRMD5Q7Z6J6 570 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 GBP7Q8N8V2 638 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 DTX3LQ8TDB6 740 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 ART4Q93070 314 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 DDX50Q9BQ39 737 aaKnown RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 GPR88Q9GZN0 384 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 NT5C3AQ9H0P0 336 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 LRRC42Q9Y546 428 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 NUMBLQ9Y6R0 609 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 COL5A2P05997 1499 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 FOXN3O00409 490 aaPredicted RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 PIAS1O75925 651 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 CHRNA3P32297 505 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 CYP2J2P51589 502 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 WDR4P57081 412 aaKnown RBP12.56□□□□□ -0.4
CPSF3-202ENST00000460593 TMED2Q15363 201 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 MUM1Q2TAK8 710 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 EDRF1Q3B7T1 1238 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 SPDYCQ5MJ68 293 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 DAB2IPQ5VWQ8 1189 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 LMNTD2Q8IXW0 634 aa12.56□□□□□ -0.4
CPSF3-202ENST00000460593 LIN7AO14910 233 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 FTLP02792 175 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 T-ENOLP0DO92 83 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NMT1P30419 496 aaKnown RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 SLC12A3P55017 1021 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NPEPPSP55786 919 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 BTNL9Q6UXG8 535 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 DNAJC9Q8WXX5 260 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NAP1L3Q99457 506 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 STMN4Q9H169 189 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NCANO14594 1321 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 ATP6V1C1P21283 382 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 KRT17Q04695 432 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CALCOCO2Q13137 446 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 KHDC1Q4VXA5 237 aaKnown RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CYP4F22Q6NT55 531 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CATSPER3Q86XQ3 398 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 SLC7A6OSQ96CW6 309 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 ZSWIM1Q9BR11 485 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 BSDC1Q9NW68 430 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NAALADL1Q9UQQ1 740 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 FAM196BA6NMK8 535 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 ZBTB39O15060 712 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 THAP12O43422 761 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CALCAP01258 141 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CCNG1P51959 295 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 SNAP25P60880 206 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 MTFR1Q15390 333 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 MFSD5Q6N075 450 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CCNJLQ8IV13 435 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 KAT5Q92993 513 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 RAB3IPQ96QF0 476 aaPredicted RBP12.55□□□□□ -0.4
CPSF3-202ENST00000460593 CHST7Q9NS84 486 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 NMRK1Q9NWW6 199 aa12.55□□□□□ -0.4
CPSF3-202ENST00000460593 O00370 1275 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 LMNB1P20700 586 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 CTNNA2P26232 953 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 DRG2P55039 364 aaKnown RBP12.54□□□□□ -0.4
CPSF3-202ENST00000460593 USP4Q13107 963 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 RCN2Q14257 317 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 CERKLQ49MI3 558 aaPredicted RBP12.54□□□□□ -0.4
CPSF3-202ENST00000460593 SEL1L2Q5TEA6 688 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 DSTYKQ6XUX3 929 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 C4orf33Q8N1A6 199 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 ASAP3Q8TDY4 903 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 LZTS2Q9BRK4 669 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 C12orf65Q9H3J6 166 aaKnown RBP12.54□□□□□ -0.4
CPSF3-202ENST00000460593 DNAJC18Q9H819 358 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 NKIRAS1Q9NYS0 192 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 GRID1Q9ULK0 1009 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 ITGA8P53708 1063 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 KLC1Q07866 573 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 TMEM63BQ5T3F8 832 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 RNF207Q6ZRF8 634 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 KCTD1Q719H9 257 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 ZC3H3Q8IXZ2 948 aaKnown RBP12.54□□□□□ -0.4
CPSF3-202ENST00000460593 HERPUD2Q9BSE4 406 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 TMEM109Q9BVC6 243 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 BHMT2Q9H2M3 363 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 PCYOX1Q9UHG3 505 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 TRAF3IP3Q9Y228 551 aa12.54□□□□□ -0.4
CPSF3-202ENST00000460593 KIAA1551Q9HCM1 1747 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 WDR91A4D1P6 747 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SPOPO43791 374 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RTN3O95197 1032 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RANBP1P43487 201 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 LAMB3Q13751 1172 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ZC3H18Q86VM9 953 aaKnown RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 FAM186BQ8IYM0 893 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 NRG4Q8WWG1 115 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 LRRC37BQ96QE4 947 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms