RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 NPY5RQ15761 445 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TKFCQ3LXA3 575 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 OTUD6AQ7L8S5 288 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SPATA21Q7Z572 469 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ARHGAP22Q7Z5H3 698 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PALM2Q8IXS6 379 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ADSSL1Q8N142 457 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MYCT1Q8N699 235 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 CATSPER1Q8NEC5 780 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 NRBF2Q96F24 287 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TUFT1Q9NNX1 390 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PAPOLBQ9NRJ5 636 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ZFP69BQ9UJL9 534 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 EXOC7Q9UPT5 735 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 AGTPBP1Q9UPW5 1226 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 A0A1B0GUL6 1792 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 SPECC1L-ADORA2AF8WAN1 911 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 AHCYL1O43865 530 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 CCND2P30279 289 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 PRELPP51888 382 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 Q4G0T1 1027 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 LCA5Q86VQ0 697 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TC2NQ8N9U0 490 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 GIMAP8Q8ND71 665 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MYCBPAPQ8TBZ2 947 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MMS19Q96T76 1030 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MAK16Q9BXY0 300 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TRIM55Q9BYV6 548 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 KIAA1683Q9H0B3 1180 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 TBC1D22BQ9NU19 505 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 ARMCX3Q9UH62 379 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 LIMA1Q9UHB6 759 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 GDAQ9Y2T3 454 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 BAZ2BQ9UIF8 2168 aaKnown RBP6.62□□□□□ -1.35
VPS13D-202ENST00000460333 LAMB1P07942 1786 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 MYH1P12882 1939 aa6.62□□□□□ -1.35
VPS13D-202ENST00000460333 LRRIQ3A6PVS8 624 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 FTCDO95954 541 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ICAM1P05362 532 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 KCNA3P22001 575 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MUTP22033 750 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CXCR5P32302 372 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 HSPA9P38646 679 aaKnown RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SPP2Q13103 211 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CEP55Q53EZ4 464 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ANO5Q75V66 913 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ANKRD13CQ8N6S4 541 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 TRIML2Q8N7C3 387 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF280CQ8ND82 737 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ACER1Q8TDN7 264 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 HINFPQ9BQA5 517 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CAPN11Q9UMQ6 739 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 HAUS5O94927 633 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 HARSP12081 509 aaKnown RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CASP1P29466 404 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MRPS25P82663 173 aaKnown RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 RCN2Q14257 317 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 XRRA1Q6P2D8 792 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 RNF207Q6ZRF8 634 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 DYDC2Q96IM9 177 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 FBXO40Q9UH90 709 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ZHX2Q9Y6X8 837 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MYH6P13533 1939 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MIF4GDA9UHW6 222 aaKnown RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 PPP1R3GB7ZBB8 358 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 GCNT3O95395 438 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SCTRP47872 440 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ALCAMQ13740 583 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 KCTD2Q14681 263 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SLC44A4Q53GD3 710 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 C4orf32Q8N8J7 132 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MTMR9Q96QG7 549 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 PNKPQ96T60 521 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 RGL1Q9NZL6 768 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 PCDHAC2Q9Y5I4 1007 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 LTBP3Q9NS15 1303 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 PIK3CDO00329 1044 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 LIN7AO14910 233 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SLC37A4O43826 429 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 TMCC1O94876 653 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ABCD1P33897 745 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 VHLP40337 213 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SKOR1P84550 965 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 FMR1Q06787 632 aaKnown RBP eCLIP6.61□□□□□ -1.352e-6■■■□□ 16.1
VPS13D-202ENST00000460333 NR1I3Q14994 352 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 NCAPHQ15003 741 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 WDR44Q5JSH3 913 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ANGEL2Q5VTE6 544 aaKnown RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ATG16L1Q676U5 607 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CENPUQ71F23 418 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SH3BP5LQ7L8J4 393 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 CCDC89Q8N998 374 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 SPATA20Q8TB22 786 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 MTMR8Q96EF0 704 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 RPAP3Q9H6T3 665 aaPredicted RBP6.61□□□□□ -1.35
VPS13D-202ENST00000460333 ZNF446Q9NWS9 450 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 LCMT1Q9UIC8 334 aa6.61□□□□□ -1.35
VPS13D-202ENST00000460333 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms