RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ANKRD20A8PQ5CZ79 823 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 CC2D2BQ6DHV5 1058 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 PRPF38AQ8NAV1 312 aaKnown RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 ETNPPLQ8TBG4 499 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 MICAL1Q8TDZ2 1067 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 RNF25Q96BH1 459 aaPredicted RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 SGSM3Q96HU1 749 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 POLR3CQ9BUI4 534 aaPredicted RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 HSPBP1Q9NZL4 362 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 INTUQ9ULD6 942 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 TRPC6Q9Y210 931 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 PCDHA2Q9Y5H9 948 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 TIAM2Q8IVF5 1701 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 WDR91A4D1P6 747 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 SNHG28P0DPA3 235 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 PYGMP11217 842 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 LIN9Q5TKA1 542 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 PHLDB3Q6NSJ2 640 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 UNC45AQ9H3U1 944 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 TUFT1Q9NNX1 390 aa12.73□□□□□ -0.37
MSH6-204ENST00000445503 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
MSH6-204ENST00000445503 NPEPPSP55786 919 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 MTM1Q13496 603 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 HHATQ5VTY9 493 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 DCUN1D2Q6PH85 259 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 CPA5Q8WXQ8 436 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 ZSWIM1Q9BR11 485 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 TMEM120BA0PK00 339 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 H0YIN7 160 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 RTN2O75298 545 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 SPAG7O75391 227 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 GLI3P10071 1580 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 MARSP56192 900 aaKnown RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 DMP1Q13316 513 aaPredicted RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 AOC3Q16853 763 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 SLC47A2Q86VL8 602 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 KCNV2Q8TDN2 545 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 FAM84AQ96KN4 292 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 DDX23Q9BUQ8 820 aaKnown RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 KMT5AQ9NQR1 393 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 SEL1LQ9UBV2 794 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 ECE2O60344 883 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 CPP00450 1065 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 ANXA13P27216 316 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 GBP1P32455 592 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 CLK2P49760 499 aaKnown RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 ZNF131P52739 623 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 PLA2G4FQ68DD2 849 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 KCNV1Q6PIU1 500 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 SEPT14Q6ZU15 432 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 FBF1Q8TES7 1133 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 DHX38Q92620 1227 aaKnown RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 HES6Q96HZ4 224 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 CRAMP1Q96RY5 1269 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 C11orf70Q9BRQ4 267 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 FAM129AQ9BZQ8 928 aa12.72□□□□□ -0.37
MSH6-204ENST00000445503 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.72□□□□□ -0.37
MSH6-204ENST00000445503 A0A0A6YYK5 440 aaPredicted RBP12.71□□□□□ -0.37
MSH6-204ENST00000445503 EDIL3O43854 480 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 NEBLO76041 1014 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 COILP38432 576 aaPredicted RBP12.71□□□□□ -0.37
MSH6-204ENST00000445503 RASA3Q14644 834 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 CCDC6Q16204 474 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 HYIQ5T013 277 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 ZNF449Q6P9G9 518 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 HHIPL2Q6UWX4 724 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 CEP170P1Q96L14 293 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 SYNCQ9H7C4 482 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 ECT2Q9H8V3 914 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 MYO3BQ8WXR4 1341 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 FOXO6A8MYZ6 492 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 ATP2A1O14983 1001 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 EIF3DO15371 548 aaKnown RBP eCLIP12.71□□□□□ -0.37
MSH6-204ENST00000445503 AGTP01019 485 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 PDE6BP35913 854 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 PPP2R5AQ15172 486 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 Q4G0T1 1027 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 OTOP1Q7RTM1 612 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 TRPM8Q7Z2W7 1104 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 LDHDQ86WU2 507 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 SLC13A5Q86YT5 568 aaPredicted RBP12.71□□□□□ -0.37
MSH6-204ENST00000445503 SEPT12Q8IYM1 358 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 FAM213AQ9BRX8 229 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 WNT8AQ9H1J5 351 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 AGTPBP1Q9UPW5 1226 aa12.71□□□□□ -0.37
MSH6-204ENST00000445503 PI4K2BG5E9Z4 385 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 DNM1LO00429 736 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 NPR1P16066 1061 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 DYNLT1P63172 113 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 DRP2Q13474 957 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 CBWD2Q8IUF1 395 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 FUKQ8N0W3 1084 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 ATP8B4Q8TF62 1192 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 LBHD1Q9BQE6 289 aaPredicted RBP12.71□□□□□ -0.38
MSH6-204ENST00000445503 OSBPL7Q9BZF2 842 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 ANKFY1Q9P2R3 1169 aa12.71□□□□□ -0.38
MSH6-204ENST00000445503 TPX2Q9ULW0 747 aaKnown RBP12.71□□□□□ -0.38
MSH6-204ENST00000445503 DENND3A2RUS2 1198 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 GOLGA8SH3BPF8 625 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms