RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RBL2Q08999 1139 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 LRRC39Q96DD0 335 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 FOPNLQ96NB1 174 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 POLR2MP0CAP2 368 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 RBBP8NLQ8NC74 664 aaPredicted RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 KATNAL1Q9BW62 490 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 PCDHGB4Q9UN71 923 aa7.6□□□□□ -1.19
VPS53-204ENST00000437048 MYO18AQ92614 2054 aaKnown RBP7.6□□□□□ -1.19
VPS53-204ENST00000437048 PTGDRQ13258 359 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 SPATA4Q8NEY3 305 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ACAP3Q96P50 834 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PYCARDQ9ULZ3 195 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 LSM1O15116 133 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 IRGCQ6NXR0 463 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 TRIM67Q6ZTA4 783 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 COPS6Q7L5N1 327 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 SLC7A3Q8WY07 619 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ASNSD1Q9NWL6 643 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ADGRG1Q9Y653 693 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ASNA1O43681 348 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 R3HDM1Q15032 1099 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 LVRNQ6Q4G3 990 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PM20D2Q8IYS1 436 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 SYMPKQ92797 1274 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 NR1H4Q96RI1 486 aaPredicted RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 TOM1L1O75674 476 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 IL12AP29459 219 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 NPEPPSP55786 919 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PDCLQ13371 301 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 NCF4Q15080 339 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 HIF1AQ16665 826 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 RTL3Q8N8U3 475 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 MICAL3Q7RTP6 2002 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 MTRF1O75570 445 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 STN1Q9H668 368 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 IP6K2Q9UHH9 426 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 CPSF3Q9UKF6 684 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 EMILIN1Q9Y6C2 1016 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 MED14O60244 1454 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 VWA5AO00534 786 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 TRIM49P0CI25 452 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 TRIM49CP0CI26 452 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ADSLP30566 484 aaPredicted RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 TCHHL1Q5QJ38 904 aaPredicted RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 HDAC7Q8WUI4 952 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 LPXNO60711 386 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 KRT1P04264 644 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 COPB2P35606 906 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 TMIEQ8NEW7 156 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 GRPEL2Q8TAA5 225 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 USP13Q92995 863 aaPredicted RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 DISC1Q9NRI5 854 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 POLKQ9UBT6 870 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PHF11Q9UIL8 331 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 SPATA31E1Q6ZUB1 1445 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 A0A0G2JND7 137 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ADCY6O43306 1168 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 KCNQ3O43525 872 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 COBLO75128 1261 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 FSBPO95073 299 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PSMC1P62191 440 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 KRT76Q01546 638 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ARMCX5Q6P1M9 558 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 MICALL2Q8IY33 904 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 MLPHQ9BV36 600 aaPredicted RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 FAM32AQ9Y421 112 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 IRAK1P51617 712 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 FAM69CQ0P6D2 419 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 ZCRB1Q8TBF4 217 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 INPP5DQ92835 1189 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 CENPTQ96BT3 561 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 FAM161BQ96MY7 647 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 STAP1Q9ULZ2 295 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 USTQ9Y2C2 406 aa7.59□□□□□ -1.19
VPS53-204ENST00000437048 PDS5AQ29RF7 1337 aaKnown RBP7.59□□□□□ -1.19
VPS53-204ENST00000437048 PTPRTO14522 1441 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 PTPRKQ15262 1439 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 ANKRD12Q6UB98 2062 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 KYNUQ16719 465 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 EDRF1Q3B7T1 1238 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 TAF2Q6P1X5 1199 aa7.59□□□□□ -1.2
VPS53-204ENST00000437048 C1orf131Q8NDD1 294 aaKnown RBP7.59□□□□□ -1.2
VPS53-204ENST00000437048 ZNF197O14709 1029 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 KRT72Q14CN4 511 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 CYFIP2Q96F07 1278 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 RIC8BQ9NVN3 520 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 ZC3H12BQ5HYM0 836 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 SPANXN2Q5MJ10 180 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 KCTD6Q8NC69 237 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 NFATC2IPQ8NCF5 419 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 BHMTQ93088 406 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 RBM17Q96I25 401 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 GJC2Q5T442 439 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 LRRC49Q8IUZ0 686 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 RAB42Q8N4Z0 105 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS53-204ENST00000437048 MYCNP04198 464 aaPredicted RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 PDIA3P30101 505 aaKnown RBP7.58□□□□□ -1.2
VPS53-204ENST00000437048 NCKAP1LP55160 1127 aa7.58□□□□□ -1.2
VPS53-204ENST00000437048 C16orf72Q14CZ0 275 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms