RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MCAMP43121 646 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 MAGEA10P43363 369 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 DUSP2Q05923 314 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 PTPN21Q16825 1174 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 MST1LQ2TV78 715 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 SPATS1Q496A3 300 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 HS1BP3Q53T59 392 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 CHST13Q8NET6 341 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 BORCS6Q96GS4 357 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 RBM12Q9NTZ6 932 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 NCDNQ9UBB6 729 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 ZBTB21Q9ULJ3 1066 aa7.59□□□□□ -1.19
CCDC88A-206ENST00000430086 MSX2P35548 267 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 PPP3CAQ08209 521 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 Q6ZSN1 163 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 LILRA3Q8N6C8 439 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 ZNF480Q8WV37 535 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 TMEM176AQ96HP8 235 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 SLC2A13Q96QE2 648 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 SMAD5Q99717 465 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 C1QTNF3Q9BXJ4 246 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 GPRC5DQ9NZD1 345 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 ST6GALNAC2Q9UJ37 374 aa7.58□□□□□ -1.2
CCDC88A-206ENST00000430086 AKR1B10O60218 316 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 CRHR1P34998 444 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 CASRP41180 1078 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 MFSD5Q6N075 450 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 MAMDC4Q6UXC1 1216 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 ANKRD13AQ8IZ07 590 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 OR5M3Q8NGP4 307 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 EDAQ92838 391 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 C8orf49Q96NF6 230 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 CEP89Q96ST8 783 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 ADI1Q9BV57 179 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 KRTAP3-1Q9BYR8 98 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 DEF6Q9H4E7 631 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 SH3BP1Q9Y3L3 701 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 TCAF1Q9Y4C2 921 aa7.57□□□□□ -1.2
CCDC88A-206ENST00000430086 XPOTO43592 962 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 NDUFS2O75306 463 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 HSP90B1P14625 803 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 WASP42768 502 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 SELENOPP49908 381 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 MGAT2Q10469 447 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 MRPL49Q13405 166 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 ACAP2Q15057 778 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 FKBP15Q5T1M5 1219 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 PNMA8AQ86V59 439 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 D2HGDHQ8N465 521 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 HOXB13Q92826 284 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 ARL8AQ96BM9 186 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 CHMP4CQ96CF2 233 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 IL17RAQ96F46 866 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 FAM89AQ96GI7 184 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 TEKT5Q96M29 485 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 ZNF512Q96ME7 567 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 BCO1Q9HAY6 547 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 DMRT3Q9NQL9 472 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 TRPS1Q9UHF7 1281 aa7.56□□□□□ -1.2
CCDC88A-206ENST00000430086 B8ZZF3 427 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 HOXA3O43365 443 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 ITGA10O75578 1167 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 GSPT1P15170 499 aaKnown RBP7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 ACO1P21399 889 aaKnown RBP7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 C5AR1P21730 350 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 GZMKP49863 264 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 NEK2P51955 445 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 ADAM17P78536 824 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 Q6ZVL8 140 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 OR7D4Q8NG98 312 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 DVL3Q92997 716 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 KRTAP4-7Q9BYR0 210 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 KLC2Q9H0B6 622 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 TUBD1Q9UJT1 453 aa7.55□□□□□ -1.2
CCDC88A-206ENST00000430086 FAM171A2A8MVW0 826 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ALDH1L1O75891 902 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 CCND1P24385 295 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ECHS1P30084 290 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ADSLP30566 484 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 RECQLP46063 649 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 HHEXQ03014 270 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ODF1Q14990 250 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 R3HDM1Q15032 1099 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 EFCAB2Q5VUJ9 269 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ZNF585AQ6P3V2 769 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 APBB1IPQ7Z5R6 666 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ZBTB46Q86UZ6 589 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 ANKRD35Q8N283 1001 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 CDC5LQ99459 802 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 HECAQ9UBI9 543 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 TESMINQ9Y4I5 508 aa7.54□□□□□ -1.2
CCDC88A-206ENST00000430086 NCANO14594 1321 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 PRRG2O14669 202 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 STC2O76061 302 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 ENDOD1O94919 500 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 ZNF20P17024 532 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 NOMO1Q15155 1222 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 TMEM240Q5SV17 173 aa7.53□□□□□ -1.2
CCDC88A-206ENST00000430086 PDZD4Q76G19 769 aaPredicted RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms