RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NAB2Q15742 525 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 LRRC31Q6UY01 552 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CCDC50Q8IVM0 306 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CEP120Q8N960 986 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CASKIN2Q8WXE0 1202 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CTNNBL1Q8WYA6 563 aaPredicted RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 HAUS1Q96CS2 278 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 C10orf88Q9H8K7 445 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 UMODL1Q5DID0 1318 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 EDN1P05305 212 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 CYP2C8P10632 490 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 PPP2R5CQ13362 524 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 SNRNP35Q16560 246 aaKnown RBP9.05□□□□□ -0.96
CD44-208ENST00000428726 WDR93Q6P2C0 686 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 PSMD1Q99460 953 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 TMEM117Q9H0C3 514 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 HPCAL4Q9UM19 191 aa9.05□□□□□ -0.96
CD44-208ENST00000428726 GOLGA6BA6NDN3 693 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 TNFSF9P41273 254 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 MXI1P50539 228 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PRKCEQ02156 737 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PDCLQ13371 301 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 CFAP221Q4G0U5 840 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 DPY19L2P1Q6NXN4 242 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 FRMD5Q7Z6J6 570 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 SRLQ86TD4 932 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 THNSL1Q8IYQ7 743 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 MICALL1Q8N3F8 863 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 MSL3Q8N5Y2 521 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 UBLCP1Q8WVY7 318 aaPredicted RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 ATG4AQ8WYN0 398 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 ALG3Q92685 438 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PDGFCQ9NRA1 345 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 SNX24Q9Y343 169 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PFASO15067 1338 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 XIRP2A4UGR9 3374 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 AGPSO00116 658 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PJA2O43164 708 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PRLRP16471 622 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 FGFR4P22455 802 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 SOX5P35711 763 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 POLGP54098 1239 aaPredicted RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 NLRP11P59045 1033 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 ACTR2P61160 394 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 VGLL4Q14135 290 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 SMAD1Q15797 465 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 Q3C1V9 767 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 NOP9Q86U38 636 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 FAM160B2Q86V87 743 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 AGBL3Q8NEM8 1001 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 NLRP4Q96MN2 994 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 KREMEN1Q96MU8 473 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 CCDC113Q9H0I3 377 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 POLR3FQ9H1D9 316 aaPredicted RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 MLXIPLQ9NP71 852 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 LUC7LQ9NQ29 371 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 RNF181Q9P0P0 153 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 BTBD7Q9P203 1132 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 PGAP2Q9UHJ9 254 aa9.04□□□□□ -0.96
CD44-208ENST00000428726 NOC2LQ9Y3T9 749 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 MRPL42Q9Y6G3 142 aaKnown RBP9.04□□□□□ -0.96
CD44-208ENST00000428726 PI4K2BG5E9Z4 385 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 SART1O43290 800 aaKnown RBP9.03□□□□□ -0.96
CD44-208ENST00000428726 ATP13A4Q4VNC1 1196 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 C1orf220Q5T0J3 134 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 KAZNQ674X7 775 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 SLC39A4Q6P5W5 647 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 FBXO16Q8IX29 292 aaPredicted RBP9.03□□□□□ -0.96
CD44-208ENST00000428726 CCDC33Q8N5R6 958 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 TPCN2Q8NHX9 752 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 GOLGA5Q8TBA6 731 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 C1orf54Q8WWF1 131 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 EXOC4Q96A65 974 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 GPR88Q9GZN0 384 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 EHMT1Q9H9B1 1298 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 APEX2Q9UBZ4 518 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 CLEC11AQ9Y240 323 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 PTPRJQ12913 1337 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 RGPD3A6NKT7 1758 aaPredicted RBP9.03□□□□□ -0.96
CD44-208ENST00000428726 RGPD4Q7Z3J3 1758 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 C5orf42Q9H799 3197 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 DCDC2CA8MYV0 355 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 TULP2O00295 520 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 WDR46O15213 610 aaKnown RBP9.03□□□□□ -0.96
CD44-208ENST00000428726 KIF4AO95239 1232 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 ERVK-9P63128 1117 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 GUCY1A3Q02108 690 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 PSME4Q14997 1843 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 XXYLT1Q8NBI6 393 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 C18orf8Q96DM3 657 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 ZIM3Q96PE6 472 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 ATAD5Q96QE3 1844 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 RUFY1Q96T51 708 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 TUFT1Q9NNX1 390 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 STIM2Q9P246 746 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 FBXO40Q9UH90 709 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 ZNF214Q9UL59 606 aaPredicted RBP9.03□□□□□ -0.96
CD44-208ENST00000428726 ATP8A1Q9Y2Q0 1164 aa9.03□□□□□ -0.96
CD44-208ENST00000428726 TARSL2A2RTX5 802 aaKnown RBP9.02□□□□□ -0.96
CD44-208ENST00000428726 MAP3K6O95382 1288 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms