RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 NLRC4Q9NPP4 1024 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 RIPK3Q9Y572 518 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 PCDHB13Q9Y5F0 798 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 MYMKA6NI61 221 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 CYP2C8P10632 490 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 CCND1P24385 295 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 TRPM8Q7Z2W7 1104 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 RETREG2Q8NC44 543 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 MAGEC3Q8TD91 643 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 CAVIN3Q969G5 261 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 WDR18Q9BV38 432 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 RHBDL2Q9NX52 303 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 FBXO40Q9UH90 709 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 STK24Q9Y6E0 443 aa17.15■□□□□ 0.34
PKP4-205ENST00000426248 DPPA5A6NC42 116 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 PGK2P07205 417 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 HARSP12081 509 aaKnown RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 HSD17B3P37058 310 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 TREML2Q5T2D2 321 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 CWF19L1Q69YN2 538 aaKnown RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 MXRA8Q9BRK3 442 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 TUBGCP2Q9BSJ2 902 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 SEPT9Q9UHD8 586 aaPredicted RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 ITIH6Q6UXX5 1313 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 SCN9AQ15858 1988 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 LAMA4Q16363 1823 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 ECEL1O95672 775 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 FXR2P51116 673 aaKnown RBP eCLIP17.14■□□□□ 0.337e-7■■■□□ 16
PKP4-205ENST00000426248 KIF11P52732 1056 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 MDM2Q00987 491 aaPredicted RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 ROR2Q01974 943 aaKnown RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 CEP128Q6ZU80 1094 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 FGD4Q96M96 766 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 LXNQ9BS40 222 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 GRB10Q13322 594 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 SPATA21Q7Z572 469 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 ADAT2Q7Z6V5 191 aaKnown RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 MYLK4Q86YV6 388 aaPredicted RBP17.14■□□□□ 0.33
PKP4-205ENST00000426248 P3H4Q92791 437 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 CEP170P1Q96L14 293 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 TMBIM4Q9HC24 238 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 COL4A3BPQ9Y5P4 624 aa17.14■□□□□ 0.33
PKP4-205ENST00000426248 CFAP73A6NFT4 308 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 DNAJC8O75937 253 aaPredicted RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 MARK3P27448 753 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 DNM2P50570 870 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 STK4Q13043 487 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 LRRC14Q15048 493 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 CDKAL1Q5VV42 579 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 CDCA2Q69YH5 1023 aaPredicted RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 CATSPER3Q86XQ3 398 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 WNK4Q96J92 1243 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 EPAS1Q99814 870 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 RGS16O15492 202 aaPredicted RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 MED24O75448 989 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 UBOX5O94941 541 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 COL11A2P13942 1736 aaPredicted RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 NQO1P15559 274 aaKnown RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 CCDC25Q86WR0 208 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 IQCKQ8N0W5 287 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 XPO6Q96QU8 1125 aaKnown RBP17.13■□□□□ 0.33
PKP4-205ENST00000426248 TRIM7Q9C029 511 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 KDM4CQ9H3R0 1056 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 ADCY1Q08828 1119 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 P2RX5Q93086 422 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 SYNPO2Q9UMS6 1093 aa17.13■□□□□ 0.33
PKP4-205ENST00000426248 PPP1R3GB7ZBB8 358 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 CHN1P15882 459 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.12■□□□□ 0.334e-6■□□□□ 11.3
PKP4-205ENST00000426248 HAS1Q92839 578 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 ABTB1Q969K4 478 aaPredicted RBP17.12■□□□□ 0.33
PKP4-205ENST00000426248 ZBED3Q96IU2 234 aaPredicted RBP17.12■□□□□ 0.33
PKP4-205ENST00000426248 ASCC2Q9H1I8 757 aaPredicted RBP17.12■□□□□ 0.33
PKP4-205ENST00000426248 PYGBP11216 843 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 MTERF2Q49AM1 385 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 SWSAP1Q6NVH7 229 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 LIMA1Q9UHB6 759 aaKnown RBP17.12■□□□□ 0.33
PKP4-205ENST00000426248 RAD51CO43502 376 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 CYP2J2P51589 502 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 CNTN2Q02246 1040 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 BIRC3Q13489 604 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 TMEM132BQ14DG7 1078 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 C6orf89Q6UWU4 347 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 OTUD6AQ7L8S5 288 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 LRRC34Q8IZ02 419 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 C4orf32Q8N8J7 132 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 IL31RAQ8NI17 732 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 MMP19Q99542 508 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 NMRK2Q9NPI5 230 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 LARSQ9P2J5 1176 aaKnown RBP17.12■□□□□ 0.33
PKP4-205ENST00000426248 SCOCQ9UIL1 159 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 RWDD2AQ9UIY3 292 aa17.12■□□□□ 0.33
PKP4-205ENST00000426248 A0A1B0GVG6 124 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 CLIC2O15247 247 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 ZRSR2Q15696 482 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 PDXDC2PQ6P474 469 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 CATSPERGQ6ZRH7 1159 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 UNC13DQ70J99 1090 aa17.11■□□□□ 0.33
PKP4-205ENST00000426248 INTS8Q75QN2 995 aaKnown RBP17.11■□□□□ 0.33
PKP4-205ENST00000426248 CDHR1Q96JP9 859 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms