RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RAD23BP54727 409 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 PRAMEF18Q5VWM3 479 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 TPH2Q8IWU9 490 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 ZFPM1Q8IX07 1006 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 HDAC7Q8WUI4 952 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 ZNF570Q96NI8 536 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 OLFM3Q96PB7 478 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 PARVBQ9HBI1 364 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 ZBTB48P10074 688 aaPredicted RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 PAFAH1B1P43034 410 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 KIF11P52732 1056 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 VGLL4Q14135 290 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 HLTFQ14527 1009 aaKnown RBP eCLIP10.5□□□□□ -0.73
USP54-205ENST00000424265 LBRQ14739 615 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 TRMT44Q8IYL2 757 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 PDCD7Q8N8D1 485 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 RNPC3Q96LT9 517 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 GUCA1BQ9UMX6 200 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 ZNF510Q9Y2H8 683 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 GFPT2O94808 682 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 EIF2AK2P19525 551 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 NLRP12P59046 1061 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 XRCC4Q13426 336 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 CEP55Q53EZ4 464 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 TMEM53Q6P2H8 277 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 KDM7AQ6ZMT4 941 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 GFM2Q969S9 779 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 GSDMAQ96QA5 445 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 FANCLQ9NW38 375 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 PRELPP51888 382 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 MYL5Q02045 173 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 SP4Q02446 784 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 SYMPKQ92797 1274 aaKnown RBP10.5□□□□□ -0.73
USP54-205ENST00000424265 ATG4CQ96DT6 458 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 RPS6KC1Q96S38 1066 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 FAM192AQ9GZU8 254 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 PCMTD2Q9NV79 361 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 NOD1Q9Y239 953 aa10.5□□□□□ -0.73
USP54-205ENST00000424265 TNPO2O14787 897 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 STRNO43815 780 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 AKR1B10O60218 316 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 MGEA5O60502 916 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 S100A1P23297 94 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 HOXA13P31271 388 aaPredicted RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 ATP2C1P98194 919 aaPredicted RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 TFDP1Q14186 410 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 NTRK3Q16288 839 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 KLC3Q6P597 504 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 RETREG2Q8NC44 543 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CEP70Q8NHQ1 597 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 IQCDQ96DY2 449 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CENPOQ9BU64 300 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 PDP2Q9P2J9 529 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 TMEM247A6NEH6 219 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 DDX39AO00148 427 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 LCA5LO95447 670 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 BCRP11274 1271 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 SF3A3Q12874 501 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-205ENST00000424265 MKRN3Q13064 507 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 CAPN12Q6ZSI9 719 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 VPS36Q86VN1 386 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CLEC10AQ8IUN9 316 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 DNERQ8NFT8 737 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 LARP4BQ92615 738 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 GPRASP2Q96D09 838 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 SAR1BQ9Y6B6 198 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 TNS1Q9HBL0 1735 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 UPP2O95045 317 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 GNA14O95837 355 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 TUBA1BP68363 451 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CYLC2Q14093 348 aaPredicted RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 TUBA1AQ71U36 451 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 ERICH1Q86X53 443 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 ZBTB8OSQ8IWT0 167 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 HACE1Q8IYU2 909 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 SH2D3CQ8N5H7 860 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 TIPINQ9BVW5 301 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CSRNP2Q9H175 543 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 ABCF3Q9NUQ8 709 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 IKBKGQ9Y6K9 419 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 MUTP22033 750 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 SERPINB3P29508 390 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 HOXD12P35452 270 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 TRPC1P48995 793 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 ZNF131P52739 623 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 FCGRTP55899 365 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 USP17L6PQ6QN14 398 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 RSPH3Q86UC2 560 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 ZC3H18Q86VM9 953 aaKnown RBP10.49□□□□□ -0.73
USP54-205ENST00000424265 GPBP1Q86WP2 473 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 RIT2Q99578 217 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 EURLQ9NYK6 297 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 PCDHB6Q9Y5E3 794 aa10.49□□□□□ -0.73
USP54-205ENST00000424265 CTDNEP1O95476 244 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 TUFMP49411 452 aaKnown RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 CCSAPQ6IQ19 270 aaPredicted RBP10.48□□□□□ -0.73
USP54-205ENST00000424265 TAOK1Q7L7X3 1001 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SGIP1Q9BQI5 828 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 SENP2Q9HC62 589 aa10.48□□□□□ -0.73
USP54-205ENST00000424265 CCDC88AQ3V6T2 1871 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms