RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 MAPK13O15264 365 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 SLC16A3O15427 465 aaKnown RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 TSPAN1O60635 241 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 CKBP12277 381 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 SFPQP23246 707 aaKnown RBP eCLIP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 EEF1GP26641 437 aaKnown RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 AXLP30530 894 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 MRE11P49959 708 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 MARSP56192 900 aaKnown RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 SPAG1Q07617 926 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 NCBP1Q09161 790 aaKnown RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 HSP90AA2PQ14568 343 aaPredicted RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 ATF7IP2Q5U623 682 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 TRAF7Q6Q0C0 670 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 FAM43BQ6ZT52 329 aaPredicted RBP15.59■□□□□ 0.09
SF3B1-204ENST00000414963 FAM114A1Q8IWE2 563 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 CCDC155Q8N6L0 562 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 USP38Q8NB14 1042 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 TMEM40Q8WWA1 233 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 FBXL18Q96ME1 805 aa15.59■□□□□ 0.09
SF3B1-204ENST00000414963 A0A1B0GUA9 196 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 DCDC2CA8MYV0 355 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 B4GALT5O43286 388 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 CSDE1O75534 798 aaKnown RBP15.58■□□□□ 0.08
SF3B1-204ENST00000414963 HOXA11P31270 313 aaPredicted RBP15.58■□□□□ 0.08
SF3B1-204ENST00000414963 ATN1P54259 1190 aaPredicted RBP15.58■□□□□ 0.08
SF3B1-204ENST00000414963 TLE2Q04725 743 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 MCL1Q07820 350 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 BFSP2Q13515 415 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 TCP11X2Q5H9J9 407 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 ZNF618Q5T7W0 954 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 ARMCX5Q6P1M9 558 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 SARM1Q6SZW1 724 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 XXYLT1Q8NBI6 393 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 BORCS6Q96GS4 357 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 CBWD1Q9BRT8 395 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 KIAA1586Q9HCI6 787 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 HSPBP1Q9NZL4 362 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 LIMA1Q9UHB6 759 aaKnown RBP15.58■□□□□ 0.08
SF3B1-204ENST00000414963 GINS2Q9Y248 185 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 USP20Q9Y2K6 914 aa15.58■□□□□ 0.08
SF3B1-204ENST00000414963 CLDN3O15551 220 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 PQBP1O60828 265 aaKnown RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 AKAP3O75969 853 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 ERLIN2O94905 339 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 ARF4P18085 180 aaPredicted RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 PSMC2P35998 433 aaKnown RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 FAAP100Q0VG06 881 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 TRIM60Q495X7 471 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 FBXO47Q5MNV8 452 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 MPZL3Q6UWV2 235 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 CATSPER4Q7RTX7 472 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 FRMD5Q7Z6J6 570 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 FAM228AQ86W67 206 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 POMGNT1Q8WZA1 660 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 CCDC51Q96ER9 411 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 ZBTB45Q96K62 511 aaPredicted RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 HAPLN2Q9GZV7 340 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 AGPAT5Q9NUQ2 364 aa15.57■□□□□ 0.08
SF3B1-204ENST00000414963 NOC2LQ9Y3T9 749 aaKnown RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 KIAA0100Q14667 2235 aaKnown RBP15.57■□□□□ 0.08
SF3B1-204ENST00000414963 KCNJ18B7U540 433 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 N4BP3O15049 544 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 GPR182O15218 404 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 EXTL3O43909 919 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 EXOC3O60645 756 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 RPS6KA5O75582 802 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 LDHAP00338 332 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CTSHP09668 335 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 MCF2P10911 925 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 ATP1A3P13637 1013 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 SELPP16109 830 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 EN2P19622 333 aaPredicted RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CDK11BP21127 795 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CASP4P49662 377 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CYP2J2P51589 502 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 POU5F1Q01860 360 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 ENPEPQ07075 957 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 KCNJ12Q14500 433 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 LPIN1Q14693 890 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 LRRC26Q2I0M4 334 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 APTXQ7Z2E3 356 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 EEF2KMTQ96G04 330 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CNOT6LQ96LI5 555 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 NOC4LQ9BVI4 516 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 PCIF1Q9H4Z3 704 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 PDZD7Q9H5P4 517 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 METTL14Q9HCE5 456 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 CHST12Q9NRB3 414 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 MAGEC2Q9UBF1 373 aaPredicted RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 AGO2Q9UKV8 859 aaKnown RBP15.56■□□□□ 0.08
SF3B1-204ENST00000414963 FRMD4BQ9Y2L6 1034 aa15.56■□□□□ 0.08
SF3B1-204ENST00000414963 FAM189A1O60320 539 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 EPB41P11171 864 aaKnown RBP15.55■□□□□ 0.08
SF3B1-204ENST00000414963 FGFR4P22455 802 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 FANCCQ00597 558 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 KYAT1Q16773 422 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 EEF1DP3Q658K8 133 aa15.55■□□□□ 0.08
SF3B1-204ENST00000414963 NOTUMQ6P988 496 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms