RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 TRIM49P0CI25 452 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 TRIM49CP0CI26 452 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 BTBD8Q5XKL5 378 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CLEC10AQ8IUN9 316 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 SCG3Q8WXD2 468 aaKnown RBP18.4■□□□□ 0.54
PHRF1-202ENST00000413872 SDCCAG3Q96C92 435 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 FSD1LQ9BXM9 530 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 EHD4Q9H223 541 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 PARVAQ9NVD7 372 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 EHD2Q9NZN4 543 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 PITPNM2Q9BZ72 1349 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 BNIP3LO60238 219 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 RHOBTB3O94955 611 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CYP2B6P20813 491 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 RAD51Q06609 339 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CFAP36Q96G28 342 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 SF3A3Q12874 501 aaKnown RBP eCLIP18.4■□□□□ 0.541e-6■■■■■ 28.7
PHRF1-202ENST00000413872 ZSCAN26Q16670 478 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 ERO1BQ86YB8 467 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 RPA1P27694 616 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CPT1AP50416 773 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CDK17Q00537 523 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 DGKDQ16760 1214 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CDKL3Q8IVW4 592 aaPredicted RBP18.4■□□□□ 0.54
PHRF1-202ENST00000413872 TEX2Q8IWB9 1127 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 CNPY4Q8N129 248 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 DAGLBQ8NCG7 672 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 RFFLQ8WZ73 363 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 ATG4CQ96DT6 458 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 IFT43Q96FT9 208 aa18.4■□□□□ 0.54
PHRF1-202ENST00000413872 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.4■□□□□ 0.54
PHRF1-202ENST00000413872 ADGRB1O14514 1584 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 TTC4O95801 387 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 ICAM1P05362 532 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 SRGNP10124 158 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 FXR2P51116 673 aaKnown RBP eCLIP18.39■□□□□ 0.544e-7■■■■□ 23.2
PHRF1-202ENST00000413872 PRKCEQ02156 737 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 KCTD16Q68DU8 428 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 NUDT18Q6ZVK8 323 aa18.39■□□□□ 0.54
PHRF1-202ENST00000413872 ZNF668Q96K58 619 aaPredicted RBP18.39■□□□□ 0.54
PHRF1-202ENST00000413872 MEGF6O75095 1541 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 TAC1P20366 129 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 GCLCP48506 637 aaPredicted RBP18.39■□□□□ 0.53
PHRF1-202ENST00000413872 FAM102AQ5T9C2 384 aaPredicted RBP18.39■□□□□ 0.53
PHRF1-202ENST00000413872 VPS33BQ9H267 617 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 EIF3DO15371 548 aaKnown RBP eCLIP18.39■□□□□ 0.53
PHRF1-202ENST00000413872 ADORA2BP29275 332 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 IFNAR2P48551 515 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 PDXDC1Q6P996 788 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 CEP120Q8N960 986 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 TUBB6Q9BUF5 446 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 FNDC3AQ9Y2H6 1198 aaKnown RBP18.39■□□□□ 0.53
PHRF1-202ENST00000413872 GRID2IPA4D2P6 1211 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 KRT38O76015 456 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 FCGRTP55899 365 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 HINFPQ9BQA5 517 aa18.39■□□□□ 0.53
PHRF1-202ENST00000413872 LIMA1Q9UHB6 759 aaKnown RBP18.39■□□□□ 0.53
PHRF1-202ENST00000413872 TMEM132DQ14C87 1099 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 SGSM1Q2NKQ1 1148 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 ANKRD40Q6AI12 368 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 REEP2Q9BRK0 252 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 C17orf75Q9HAS0 396 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 BAIAP2L1Q9UHR4 511 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 TTC26A0AVF1 554 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 TXNDC9O14530 226 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 BCAR1P56945 870 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 GFPT1Q06210 699 aaPredicted RBP18.38■□□□□ 0.53
PHRF1-202ENST00000413872 NR1H3Q13133 447 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 ATG16L1Q676U5 607 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 LRGUKQ96M69 825 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 FAN1Q9Y2M0 1017 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 WDR72Q3MJ13 1102 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 HEATR6Q6AI08 1181 aaKnown RBP18.38■□□□□ 0.53
PHRF1-202ENST00000413872 ADSSL1Q8N142 457 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 APPL2Q8NEU8 664 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 CFAP61Q8NHU2 1237 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 TMEM143Q96AN5 459 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 POLLQ9UGP5 575 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 CAPN11Q9UMQ6 739 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 MAGED2Q9UNF1 606 aaPredicted RBP18.38■□□□□ 0.53
PHRF1-202ENST00000413872 METTL16Q86W50 562 aaKnown RBP18.38■□□□□ 0.53
PHRF1-202ENST00000413872 SPDYE1Q8NFV5 336 aaPredicted RBP18.38■□□□□ 0.53
PHRF1-202ENST00000413872 Q9H521 79 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 AGAP1Q9UPQ3 857 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 STK38LQ9Y2H1 464 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 HEY1Q9Y5J3 304 aa18.38■□□□□ 0.53
PHRF1-202ENST00000413872 SPDYE2BA6NHP3 402 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 ZMYND10O75800 440 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 SPDYE6P0CI01 402 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 CHRNA3P32297 505 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 SERPINB6P35237 376 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 SLC1A1P43005 524 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 ZNF746Q6NUN9 644 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-202ENST00000413872 SH3TC2Q8TF17 1288 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 MKNK1Q9BUB5 465 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 POLR3CQ9BUI4 534 aaPredicted RBP18.37■□□□□ 0.53
PHRF1-202ENST00000413872 NEURL4Q96JN8 1562 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 IGSF9BQ9UPX0 1349 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 IQGAP1P46940 1657 aa18.37■□□□□ 0.53
PHRF1-202ENST00000413872 RPS6KA5O75582 802 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms